ArticleEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin2020
Multilevel genome typing: genomics-guided scalable resolution typing of microbial pathogens.
Article in Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 31 citations in OpenAlex.
- CharacterizingmSystems · 2025Article
- Molecular epidemiology and genomic features of Bordetella pertussis in Tianjin, China, 2023.BMC microbiology · 2025Article
- Genomic dissection of the antimicrobial resistance epidemiology ofFrontiers in microbiology · 2025Article
- DODGE: automated point source bacterial outbreak detection using cumulative long term genomic surveillance.Bioinformatics (Oxford, England) · 2024Article
- SaLTy: a novelMicrobial genomics · 2024Article
- Corynebacterium pseudotuberculosis: Whole genome sequencing reveals unforeseen and relevant genetic diversity in this pathogen.PloS one · 2024Article
- Genomic diversity ofFrontiers in microbiology · 2024Article
- Emergence and genomic insights of non-pandemic O1Microbiology spectrum · 2023Article
- Genomic epidemiology and multilevel genome typing ofEmerging microbes & infections · 2023Article
- Article
- Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis.Microbiology spectrum · 2023Article
- MGTdb: a web service and database for studying the global and local genomic epidemiology of bacterial pathogens.Database : the journal of biological databases and curation · 2022Article
- In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes.BMC genomics · 2022Article
- Genomic Epidemiology of ClinicalMicroorganisms · 2022Article
- Multilevel Genome Typing Describes Short- and Long-Term Vibrio cholerae Molecular Epidemiology.mSystems · 2021Article
- Elucidation of global and national genomic epidemiology ofMicrobial genomics · 2021Article
- Genomic Characterization of Antimicrobial Resistance in Food Chain and Livestock-AssociatedAnimals : an open access journal from MDPI · 2021Review
Corrections and comments
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
BackgroundBoth long- and short-term epidemiology are fundamental to disease control and require accurate bacterial typing. Genomic data resulting from implementation of whole genome sequencing in many public health laboratories can potentially provide highly sensitive and accurate descriptions of strain relatedness. Previous typing efforts using these data have mainly focussed on outbreak detection.AimWe aimed to develop multilevel genome typing (MGT), using consecutive multilocus sequence typing (MLST) schemes of increasing sizes, stepping up from seven-gene MLST to core genome MLST, to allow examination of genetic relatedness at multiple resolution levels.MethodsThe system was applied to
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