Evidence map›Paper›PMID 32458061›Full record

ArticleCurrent microbiology2020

Complete Genome of Vibrio neocaledonicus CGJ02-2, An active Compounds Producing Bacterium Isolated from South China Sea.

Lin Tan, Isabel Gómez-Betancur, Suxia Guo, Yu Ge, Jianping Zhao, Chang Chen, Nan Wang

Abstract read
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In one paragraph

Article in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lin TanHaikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences (CATAS), Haikou, 571101, Hainan, China. tanlin7402@126.com.
Isabel Gómez-BetancurHaikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences (CATAS), Haikou, 571101, Hainan, China.
Suxia GuoHaikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences (CATAS), Haikou, 571101, Hainan, China.
Yu GeHaikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences (CATAS), Haikou, 571101, Hainan, China.
Jianping ZhaoSchool of Pharmacy, National Center for Natural Products Research, Thad Cochran Research Center, University of Mississippi, University, MS, 38677, USA.
Chang ChenKey Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, Guangdong, China. chen.chang@scsio.ac.cn.
Nan WangHaikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences (CATAS), Haikou, 571101, Hainan, China.

Funding

Key Research and Development Project of Hainan Province ZDYF2019167
6 · The paper itself

Abstract

Strain CGJ02-2 was isolated from the coral reefs in South China sea and deposited in South China Sea Institute of Oceanology, Chinese Academy of Sciences. Active compounds including indole, ρ-hydroxybenzaldehyde were isolated from this strain. To explore the biosynthetic way of these compounds and search gene clusters, the complete genome of this strain was sequenced by Single Molecule, Real-Time (SMRT) technology. It was de novo assembled to two circular chromosomes of 3,400,283 bp with GC% 44.77 and 1,845,572 bp with GC% 44.59 respectively and classified as Vibrio alginolyticus. In silico phenotype features of Vibrio alginolyticus CGJ02-2 were also analyzed. The biosynthetic pathway of ρ-hydroxybenzaldehyde and indole in this strain were postulated. Gene clusters of four secondary metabolites including bacteriocin, ectoine, siderophore, arylpolyene were identified. This study provides helpful information for further utilizing Vibrio alginolyticus CGJ02-2 as a source of valuable bioactive compounds.

Indexed as

Vibrio alginolyticusBase SequenceChinaVibrio

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.