Evidence map›Paper›PMID 32457600›Full record

ArticleFrontiers in pharmacology2020

Long-Distance Phasing of a Tentative "Enhancer" Single-Nucleotide Polymorphism With

Erin C Boone, Wendy Y Wang, Roger Gaedigk, Mariana Cherner, Anick Bérard, J Steven Leeder, Neil A Miller, Andrea Gaedigk

Open access · goldAbstract read
In one paragraph

Article in Frontiers in pharmacology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Resolution ofInternational journal of molecular sciences · 2024
    Article
  2. Frontiers in pharmacology · 2024
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Frontiers in genetics · 2022
    Article
  8. The Identification of NovelFrontiers in pharmacology · 2022
    Article
  9. Review
  10. PharmVar GeneFocus: CYP2B6.Clinical pharmacology and therapeutics · 2021
    Review
  11. PharmVar GeneFocus: CYP2C19.Clinical pharmacology and therapeutics · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Erin C BooneDivision of Clinical Pharmacology, Toxicology and Therapeutic Innovation, Children's Mercy Kansas City, Kansas City, MO, United States.
Wendy Y WangDivision of Clinical Pharmacology, Toxicology and Therapeutic Innovation, Children's Mercy Kansas City, Kansas City, MO, United States.
Roger GaedigkDivision of Clinical Pharmacology, Toxicology and Therapeutic Innovation, Children's Mercy Kansas City, Kansas City, MO, United States.
Mariana ChernerDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, United States.
Anick BérardFaculty of Pharmacy, University of Montreal, Montreal, QC, Canada.
J Steven LeederDivision of Clinical Pharmacology, Toxicology and Therapeutic Innovation, Children's Mercy Kansas City, Kansas City, MO, United States.
Neil A MillerSchool of Medicine, University of Missouri-Kansas City, Kansas City, MO, United States.
Andrea GaedigkDivision of Clinical Pharmacology, Toxicology and Therapeutic Innovation, Children's Mercy Kansas City, Kansas City, MO, United States.
Children's Mercy Hospital · USUniversity of Missouri–Kansas City · USUniversité de Montréal · CAUniversity of California, San Diego · US

Funding

Mentoring Clinical Researchers at the Intersection of NeuroHIV and Substance AbuseK24DA040550 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHERNER, MARIANA · 2015 to 2025
$1.8M
GOLDILOKs: Project 2: TranslationalP50HD090258 · NICHD · CHILDREN'S MERCY HOSP (KANSAS CITY, MO) · PI LEEDER, JAMES STEVEN · 2019 to 2020
$1.4M
CYP2D6 Genotype and Cognitive Deficits in Methamphetamine Users with/without HIVR01DA035736 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHERNER, MARIANA · 2013 to 2015
$1.1M
Genetics of Monooxygenase Activity & Methamphetamine-Related Brain Injury in HIVR03DA027513 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHERNER, MARIANA · 2009 to 2010
$464k
Modeling Neural Injury Effects of Methamphetamine Metabolism by CYP2D6 in HIVR21DA036423 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHERNER, MARIANA · 2013 to 2014
$426k
NICHD NIH HHS P50 HD090258NIDA NIH HHS K24 DA040550NIDA NIH HHS R01 DA035736NIDA NIH HHS R03 DA027513NIDA NIH HHS R21 DA036423
6 · The paper itself

Abstract

backgroundThe

methodsA large ethnically mixed population sample (n=3,162) was computationally phased to determine linkage between the "enhancer" SNP and

resultsPhasing predicted that the "enhancer" SNP can occur on numerous

conclusionsSince the "enhancer" SNP can be present on a portion of normal, decreased, or no function alleles, the phase of the "enhancer" SNP must be considered when investigating the impact of the "enhancer" SNP on CYP2D6 activity.

Indexed as

allele definitionCYP2D6ddPCR = droplet digital PCRenhancer SNPphasing

Identifiers

PMID32457600
PMCPMC7226225
OpenAlexW3020879553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.