Evidence map›Paper›PMID 32457360›Full record

ArticleScientific reports2020

A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria.

Catarina Churro, Ana P Semedo-Aguiar, Alexandra D Silva, Jose B Pereira-Leal, Ricardo B Leite

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
  2. Off-Flavor Compounds in Fermented Cocoa: Impact of Overfermentation.Journal of agricultural and food chemistry · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. A cohesiveWater research X · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. The Ubiquitous Soil Terpene Geosmin Acts as a Warning Chemical.Applied and environmental microbiology · 2022
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 2 countries.

Catarina Churro *Laboratório de Fitoplâncton, Departamento do Mar e Recursos Marinhos, Instituto Português do Mar e da Atmosfera, Rua Alfredo Magalhães Ramalho, 6, 1449-006, Lisboa, Portugal. catarina.churro@ipma.pt.ORCID http://orcid.org/0000-0003-2890-4338
Ana P Semedo-Aguiar *Instituto Gulbenkian de Ciência, Rua da Quinta Grande n°6, 2780-156, Oeiras, Portugal.
Alexandra D SilvaLaboratório de Fitoplâncton, Departamento do Mar e Recursos Marinhos, Instituto Português do Mar e da Atmosfera, Rua Alfredo Magalhães Ramalho, 6, 1449-006, Lisboa, Portugal.
Jose B Pereira-LealInstituto Gulbenkian de Ciência, Rua da Quinta Grande n°6, 2780-156, Oeiras, Portugal.
Ricardo B LeiteInstituto Gulbenkian de Ciência, Rua da Quinta Grande n°6, 2780-156, Oeiras, Portugal.ORCID http://orcid.org/0000-0002-9622-3895
Instituto de Artes Visuais, Design e Marketing · PTInstituto Gulbenkian de Ciência · PTJean Piaget University of Cape Verde · CVPortuguese Sea and Atmosphere Institute · PTUniversidade do Porto · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanobacteria are ubiquitous organisms with a relevant contribution to primary production in all range of habitats. Cyanobacteria are well known for their part in worldwide occurrence of aquatic blooms while producing a myriad of natural compounds, some with toxic potential, but others of high economical impact, as geosmin. We performed an environmental survey of cyanobacterial soil colonies to identify interesting metabolic pathways and adaptation strategies used by these microorganisms and isolated, sequenced and assembled the genome of a cyanobacterium that displayed a distinctive earthy/musty smell, typical of geosmin, confirmed by GC-MS analysis of the culture's volatile extract. Morphological studies pointed to a new Oscillatoriales soil ecotype confirmed by phylogenetic analysis, which we named Microcoleus asticus sp. nov. Our studies of geosmin gene presence in Bacteria, revealed a scattered distribution among Cyanobacteria, Actinobacteria, Delta and Gammaproteobacteria, covering different niches. Careful analysis of the bacterial geosmin gene and gene tree suggests an ancient bacterial origin of the gene, that was probably successively lost in different time frames. The high sequence similarities in the cyanobacterial geosmin gene amidst freshwater and soil strains, reinforce the idea of an evolutionary history of geosmin, that is intimately connected to niche adaptation.

Indexed as

ActinobacteriaBacterial ProteinsCyanobacteriaGammaproteobacteriaGas Chromatography-Mass SpectrometryGenome, BacterialMultigene FamilyNaphtholsPhylogenySolid Phase ExtractionTerpenesBacterial ProteinsgeosminNaphtholsTerpenes

Identifiers

PMID32457360
PMCPMC7251104
OpenAlexW3028868508

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.