ArticleScientific reports2020
Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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36 citing papers in PubMed.
- Endophytic microbiota and metabolites profile in gynoecious versus monoecious cucumbers.BMC plant biology · 2026Article
- Mechanistic study on the optimization of soil ecological structure and promotion of rapeseed (Frontiers in microbiology · 2026Article
- Rhizospheric and endophytic bacterial community response to continuous Atractylodes macrocephala cultivation.BMC plant biology · 2025Article
- Advances and Hotspots in Research on Verrucomicrobiota: Focus on Agroecosystems.Microbial ecology · 2025Review
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- Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance.Scientific reports · 2025Article
- Decoding the genetic drivers of marine bacterial blooms through comparative genomics.Microbiome · 2025Article
- Coconut rhinoceros beetle, Oryctes rhinoceros (Coleoptera: Scarabaeidae), larval frass as plant fertilizer.Botanical studies · 2025Article
- Beneficial communities from core bacterial microbiota of Oryza sativa L. soil and leaves perform dynamic role in growth promotion and suppression of bacterial leaf blight.World journal of microbiology & biotechnology · 2025Article
- The quest for molecular markers indicating root growth in microbially treated tomato (Solanum lycopersicum) plants.FEMS microbiology ecology · 2025Article
- Regulatory Effects of Companion Plants (Maize (Plants (Basel, Switzerland) · 2025Article
- Defining the cultured and uncultured bacterial fractions in Cannabis seeds.Environmental microbiome · 2025Article
- Population Persistence and Soil Microbial Communities of a Serpentine Endemic Plant Outside Its Historic Elevation Range.Ecology and evolution · 2025Article
- Harmful algal blooms are preceded by a predictable and quantifiable shift in the oceanic microbiome.Nature communications · 2025Article
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- Rhizosphere microbiome influence on tomato growth under low-nutrient settings.FEMS microbiology ecology · 2025Article
- Deciphering the endomicrobiome of Podophyllum hexandrum to reveal the endophytic bacterial-association of in-planta podophyllotoxin biosynthesis.World journal of microbiology & biotechnology · 2025Article
- NovelFrontiers in microbiology · 2025Article
- Article
- Effect of microbial diversity and their functions on soil nutrient cycling in the rhizosphere zone of Dahongpao mother tree and cutting Dahongpao.Frontiers in plant science · 2025Article
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5 authors.
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Abstract
Despite the relevance of complex root microbial communities for plant health, growth and productivity, the molecular basis of these plant-microbe interactions is not well understood. Verrucomicrobia are cosmopolitans in the rhizosphere, nevertheless their adaptations and functions are enigmatic since the proportion of cultured members is low. Here we report four cultivated Verrucomicrobia isolated from rice, putatively representing four novel species, and a novel subdivision. The aerobic strains were isolated from roots or rhizomes of Oryza sativa and O. longistaminata. Two of them are the first cultivated endophytes of Verrucomicrobia, as validated by confocal laser scanning microscopy inside rice roots after re-infection under sterile conditions. This extended known verrucomicrobial niche spaces. Two strains were promoting root growth of rice. Discovery of root compartment-specific Verrucomicrobia permitted an across-phylum comparison of the genomic conformance to life in soil, rhizoplane or inside roots. Genome-wide protein domain comparison with niche-specific reference bacteria from distant phyla revealed signature protein domains which differentiated lifestyles in these microhabitats. Our study enabled us to shed light into the dark microbial matter of root Verrucomicrobia, to define genetic drivers for niche adaptation of bacteria to plant roots, and provides cultured strains for revealing causal relationships in plant-microbe interactions by reductionist approaches.
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