Evidence map›Paper›PMID 32457298›Full record

ArticleNature communications2020

Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program.

Tanya T Karagiannis, John P Cleary, Busra Gok, Andrew J Henderson, Nicholas G Martin, Masanao Yajima, Elliot C Nelson, Christine S Cheng

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 60 citations in OpenAlex.

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  20. sccomp: Robust differential composition and variability analysis for single-cell data.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Tanya T Karagiannis *Program in Bioinformatics, Boston University, 24 Cummington Mall, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0003-4065-495X
John P Cleary *Department of Biology, Boston University, 5 Cummington Mall, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0002-9771-2615
Busra GokDepartment of Biology, Boston University, 5 Cummington Mall, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0002-4473-1273
Andrew J HendersonDepartment of Medicine and Microbiology, Boston University School of Medicine, 650 Albany St, Boston, MA, 02215, USA.
Nicholas G MartinQIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.ORCID http://orcid.org/0000-0003-4069-8020
Masanao YajimaDepartment of Mathematics and Statistics, Boston University, 111 Cummington Mall, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0002-7583-3707
Elliot C NelsonDepartment of Psychiatry, Washington University School of Medicine, 660S. Euclid Ave, St. Louis, MO, 63110, USA.ORCID http://orcid.org/0000-0002-3037-3962
Christine S ChengProgram in Bioinformatics, Boston University, 24 Cummington Mall, Boston, MA, 02215, USA. chcheng@bu.edu.
Boston University · USQIMR Berghofer Medical Research Institute · AUWashington University in St. Louis · US

Funding

Translational ScienceP30AI042853 · NIAID · MIRIAM HOSPITAL · PI CURT G BECKWITH · 1998 to 2026
$51.7M
Identifying Genetic Variants Associated with Opioid Overdose MortalityR01DA046436 · NIDA · WASHINGTON UNIVERSITY · PI AGRAWAL, ARPANA, NELSON, ELLIOT C · 2018 to 2022
$4.8M
Single nuclei transcriptomics of Alzheimer's brain diseaseR61DA047032 · NIDA · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI CHENG, CHRISTINE, HENDERSON, ANDREW J · 2018 to 2020
$3.5M
Synergistic Mechanisms of chronic Innate Immune Activation in Microglia by Opiates and HIV InfectionR01DA051889 · NIDA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CHENG, CHRISTINE, GUMMULURU, SURYARAM · 2020 to 2024
$3.5M
NON-DEPENDENT OPIOID MISUSERS AS GWAS CONTROLSR01DA042620 · NIDA · WASHINGTON UNIVERSITY · PI AGRAWAL, ARPANA, NELSON, ELLIOT C · 2017 to 2021
$3.3M
Predoctoral Training in Bioinformatics and Computational BiologyT32GM100842 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI TULLIUS, THOMAS D · 2012 to 2022
$2.8M
Opioid Dependence: Candidate Genes and G x E EffectsR01DA017305 · NIDA · WASHINGTON UNIVERSITY · PI NELSON, ELLIOT C · 2003 to 2007
$2.5M
Signals that establish and maintain HIV latencyR01AI138960 · NIAID · BOSTON MEDICAL CENTER · PI HENDERSON, ANDREW J · 2018 to 2022
$2.2M
Effect of opioid use disorder on HIV latent reservoirs and immune dysfunction assessed by single-cell transcriptomicsR33DA047032 · NIDA · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI CHENG, CHRISTINE, HENDERSON, ANDREW J · 2021 to 2022
$1.8M
USING TRANSGENIC MICE TO EXAMINE THE ROLE OF CNIH3 VARIANTS IN OPIOID DEPENDENCER33DA041883 · NIDA · WASHINGTON UNIVERSITY · PI DOUGHERTY, JOSEPH D, MORON-CONCEPCION, JOSE A · 2018 to 2020
$1.1M
NIAID NIH HHS P30 AI042853NIAID NIH HHS R01 AI138960NIDA NIH HHS R01 DA017305NIDA NIH HHS R01 DA042620NIDA NIH HHS R01 DA046436NIDA NIH HHS R01 DA051889NIDA NIH HHS R33 DA041883NIDA NIH HHS R33 DA047032NIDA NIH HHS R61 DA047032NIGMS NIH HHS T32 GM100842
6 · The paper itself

Abstract

Chronic opioid usage not only causes addiction behavior through the central nervous system, but also modulates the peripheral immune system. However, how opioid impacts the immune system is still barely characterized systematically. In order to understand the immune modulatory effect of opioids in an unbiased way, here we perform single-cell RNA sequencing (scRNA-seq) of peripheral blood mononuclear cells from opioid-dependent individuals and controls to show that chronic opioid usage evokes widespread suppression of antiviral gene program in naive monocytes, as well as in multiple immune cell types upon stimulation with the pathogen component lipopolysaccharide. Furthermore, scRNA-seq reveals the same phenomenon after a short in vitro morphine treatment. These findings indicate that both acute and chronic opioid exposure may be harmful to our immune system by suppressing the antiviral gene program. Our results suggest that further characterization of the immune modulatory effects of opioid is critical to ensure the safety of clinical opioids.

Indexed as

AdultAntiviral AgentsFemaleGene Expression ProfilingGene Expression RegulationHumansImmunity, InnateInterferonsLeukocytes, MononuclearLipopolysaccharidesMaleMiddle AgedMorphineOpioid-Related DisordersSingle-Cell AnalysisVirus DiseasesAntiviral AgentsInterferonsLipopolysaccharidesMorphine

Identifiers

PMID32457298
PMCPMC7250875
OpenAlexW3031468808

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.