Evidence map›Paper›PMID 32454153›Full record

ArticleJournal of molecular biology2020

Phage G Structure at 6.1 Å Resolution, Condensed DNA, and Host Identity Revision to a Lysinibacillus.

Brenda González, Lyman Monroe, Kunpeng Li, Rui Yan, Elena Wright, Thomas Walter, Daisuke Kihara, Susan T Weintraub, Julie A Thomas, Philip Serwer and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. The biology of jumbo phages.Nature communications · 2026
    Review
  3. Article
  4. Article
  5. Phage diversity in One Health.Essays in biochemistry · 2024
    Review
  6. Article
  7. Soil Giant Phage: Genome and Biological Characteristics ofInternational journal of molecular sciences · 2024
    Article
  8. Viruses · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. A Capsid Structure ofViruses · 2022
    Article
  13. Viral Complexity.Biomolecules · 2022
    Review
  14. Review
  15. Predicting the capsid architecture of phages from metagenomic data.Computational and structural biotechnology journal · 2022
    Article
  16. Capsid Structure ofJournal of virology · 2021
    Article
  17. Article
  18. Basics for Improved Use of Phages for Therapy.Antibiotics (Basel, Switzerland) · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Brenda GonzálezDepartment of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA.
Lyman MonroeDepartment of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA.
Kunpeng LiDepartment of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA.
Rui YanDepartment of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA.
Elena WrightDepartment of Biochemistry and Structural Biology, The University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA.
Thomas WalterDepartment of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA.
Daisuke KiharaDepartment of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA; Department of Computer Science, Purdue University, 305 North University Street, West Lafayette, IN 47907-2107, USA.
Susan T WeintraubDepartment of Biochemistry and Structural Biology, The University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA.
Julie A ThomasGosnell School of Life Sciences, Rochester Institute of Technology, 85 Lomb Memorial Drive, Rochester, NY 14623, USA.
Philip SerwerDepartment of Biochemistry and Structural Biology, The University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA.
Wen JiangDepartment of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA; Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47907-2084, USA; Purdue Cryo-EM Facility, Purdue University, Hockmeyer Hall of Structural Biology, 240 South Martin Jischke Drive, West Lafayette, IN 47907-1971, USA; Purdue Center for Cancer Research, Purdue University, 201 South University Street, West Lafayette, IN 47907, USA; Purdue Institute for Infectious, Immunology and Inflammatory Diseases, Purdue University, 207 South Martin Jischke Drive, West Lafayette, IN 47907, USA; Purdue Institute for Drug Discovery, Purdue University, 720 Clinic Drive, West Lafayette, IN 47097, USA. Electronic address: jiang12@purdue.edu.
Purdue University West Lafayette · USThe University of Texas Health Science Center at San Antonio · USRochester Institute of Technology · US

Funding

Purdue University Molecular Biophysics Training ProgramT32GM132024 · NIGMS · PURDUE UNIVERSITY · PI Angeline Marie Lyon, John Tesmer · 2019 to 2026
$2.0M
Structural Modeling of Multifarious Protein ComplexesR01GM123055 · NIGMS · PURDUE UNIVERSITY · PI KIHARA, DAISUKE · 2017 to 2020
$1.2M
Orbitrap XL/ETD Mass SpectrometerS10RR025111 · NCRR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WEINTRAUB, SUSAN T · 2009 to 2009
$776k
Characterization of a giant virion and its unusual cargo of ejection proteinsUA5GM126533 · NIGMS · ROCHESTER INSTITUTE OF TECHNOLOGY · PI THOMAS, JULIE A. · 2018 to 2018
$427k
NCRR NIH HHS S10 RR025111NIGMS NIH HHS R01 GM123055NIGMS NIH HHS T32 GM132024NIGMS NIH HHS UA5 GM126533
6 · The paper itself

Abstract

Phage G has the largest capsid and genome of any known propagated phage. Many aspects of its structure, assembly, and replication have not been elucidated. Herein, we present the dsDNA-packed and empty phage G capsid at 6.1 and 9 Å resolution, respectively, using cryo-EM for structure determination and mass spectrometry for protein identification. The major capsid protein, gp27, is identified and found to share the HK97-fold universally conserved in all previously solved dsDNA phages. Trimers of the decoration protein, gp26, sit on the 3-fold axes and are thought to enhance the interactions of the hexameric capsomeres of gp27, for other phages encoding decoration proteins. Phage G's decoration protein is longer than what has been reported in other phages, and we suspect the extra interaction surface area helps stabilize the capsid. We identified several additional capsid proteins, including a candidate for the prohead protease responsible for processing gp27. Furthermore, cryo-EM reveals a range of partially full, condensed DNA densities that appear to have no contact with capsid shell. Three analyses confirm that the phage G host is a Lysinibacillus, and not Bacillus megaterium: identity of host proteins in our mass spectrometry analyses, genome sequence of the phage G host, and host range of phage G.

Indexed as

Nucleic Acid ConformationBacteriophagesCapsid ProteinsCryoelectron MicroscopyDNA PackagingDNA, ViralHumansVirus AssemblyCapsid ProteinsDNA, Viraldecoration proteinsDNA condensatesDNA packagingLysinibacillusphage G

Identifiers

PMID32454153
PMCPMC7316594
OpenAlexW3026632374

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.