Evidence map›Paper›PMID 32453801›Full record

ArticlePloS one2020

Runx3 prevents spontaneous colitis by directing the differentiation of anti-inflammatory mononuclear phagocytes.

Shay Hantisteanu, Yosef Dicken, Varda Negreanu, Dalia Goldenberg, Ori Brenner, Dena Leshkowitz, Joseph Lotem, Ditsa Levanon, Yoram Groner

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Tissue signatures of human macrophages during homeostasis and activation.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Article
  4. Article
  5. Gut microbes · 2025
    Article
  6. Article
  7. Article
  8. Runx3 Regulates CD8International journal of molecular sciences · 2024
    Article
  9. Article
  10. Macrophages in intestinal homeostasis and inflammatory bowel disease.Nature reviews. Gastroenterology & hepatology · 2023
    Review
  11. Transcriptomic Context ofBiomedicines · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Shay HantisteanuDepartment of Molecular Genetics, The Weizmann Institute of Science, Rehovot, Israel.
Yosef DickenDepartment of Molecular Genetics, The Weizmann Institute of Science, Rehovot, Israel.
Varda NegreanuDepartment of Molecular Genetics, The Weizmann Institute of Science, Rehovot, Israel.
Dalia GoldenbergDepartment of Molecular Genetics, The Weizmann Institute of Science, Rehovot, Israel.
Ori BrennerVeterinary Resources, The Weizmann Institute of Science, Rehovot, Israel.
Dena LeshkowitzBioinformatics Unit, The Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-4703-2830
Joseph LotemDepartment of Molecular Genetics, The Weizmann Institute of Science, Rehovot, Israel.
Ditsa LevanonDepartment of Molecular Genetics, The Weizmann Institute of Science, Rehovot, Israel.
Yoram GronerDepartment of Molecular Genetics, The Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-0084-0790
Weizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mice deficient in the transcription factor Runx3 develop a multitude of immune system defects, including early onset colitis. This paper demonstrates that Runx3 is expressed in colonic mononuclear phagocytes (MNP), including resident macrophages (RM) and dendritic cell subsets (cDC2). Runx3 deletion in MNP causes early onset colitis due to their impaired maturation. Mechanistically, the resulting MNP subset imbalance leads to up-regulation of pro-inflammatory genes as occurs in IL10R-deficient RM. In addition, RM and cDC2 display a marked decrease in expression of anti-inflammatory/TGF β-regulated genes and β-catenin signaling associated genes, respectively. MNP transcriptome and ChIP-seq data analysis suggest that a significant fraction of genes affected by Runx3 loss are direct Runx3 targets. Collectively, Runx3 imposes intestinal immune tolerance by regulating maturation of colonic anti-inflammatory MNP, befitting the identification of RUNX3 as a genome-wide associated risk gene for various immune-related diseases in humans, including gastrointestinal tract diseases such as Crohn's disease and celiac.

Indexed as

Animalsbeta CateninCell DifferentiationColitisColonCore Binding Factor Alpha 3 SubunitDisease Models, AnimalHumansMiceMononuclear Phagocyte SystemReceptors, Interleukin-10Signal TransductionTransforming Growth Factor betaUp-Regulationbeta CateninCore Binding Factor Alpha 3 SubunitCTNNB1 protein, mouseReceptors, Interleukin-10Runx3 protein, mouseTransforming Growth Factor beta

Identifiers

PMID32453801
PMCPMC7250423
OpenAlexW3031136751

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.