Evidence map›Paper›PMID 32452643›Full record

ArticleEnvironmental microbiology2020

Partial pathogenicity chromosomes in Fusarium oxysporum are sufficient to cause disease and can be horizontally transferred.

Jiming Li, Like Fokkens, Lee James Conneely, Martijn Rep

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
  2. Transcriptomic Differences Between TwoJournal of fungi (Basel, Switzerland) · 2026
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  3. Solanaceous vegetables andHorticulture research · 2026
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  4. Genetic and Pathogenic Differentiation ofJournal of fungi (Basel, Switzerland) · 2026
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  5. Review
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  8. Journal of fungi (Basel, Switzerland) · 2026
    Article
  9. Article
  10. In Silico Identification of Pathogenicity Effectors onBiotech (Basel (Switzerland)) · 2025
    Article
  11. Article
  12. Article
  13. Fusarium Genome Sequencing and Assembly.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Frequent horizontal chromosome transfer between asexual fungal insect pathogens.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Article
  19. Article
  20. Pangenomics of flax fungal parasiteFrontiers in plant science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jiming LiMolecular Plant Pathology, University of Amsterdam, Amsterdam, 1098 XH, The Netherlands.
Like FokkensMolecular Plant Pathology, University of Amsterdam, Amsterdam, 1098 XH, The Netherlands.
Lee James ConneelyMolecular Plant Pathology, University of Amsterdam, Amsterdam, 1098 XH, The Netherlands.
Martijn RepMolecular Plant Pathology, University of Amsterdam, Amsterdam, 1098 XH, The Netherlands.ORCID 0000-0003-3608-6283
University of Amsterdam · NL

Funding

Chinese Scholarship Council 201504910768Nederlandse Organisatie voor Wetenschappelijk Onderzoek 016.veni.181.090
6 · The paper itself

Abstract

In Fusarium oxysporum f.sp. lycopersici, all effector genes reported so far - also called SIX genes - are located on a single accessory chromosome which is required for pathogenicity and can also be horizontally transferred to another strain. To narrow down the minimal region required for virulence, we selected partial pathogenicity chromosome deletion strains by fluorescence-assisted cell sorting of a strain in which the two arms of the pathogenicity chromosome were labelled with GFP and RFP respectively. By testing the virulence of these deletion mutants, we show that the complete long arm and part of the short arm of the pathogenicity chromosome are not required for virulence. In addition, we demonstrate that smaller versions of the pathogenicity chromosome can also be transferred to a non-pathogenic strain and they are sufficient to turn the non-pathogen into a pathogen. Surprisingly, originally non-pathogenic strains that had received a smaller version of the pathogenicity chromosome were much more aggressive than recipients with a complete pathogenicity chromosome. Whole genome sequencing analysis revealed that partial deletions of the pathogenicity chromosome occurred mainly close to repeats, and that spontaneous duplication of sequences in accessory regions is frequent both in chromosome deletion strains and in horizontal transfer strains.

Indexed as

Chromosome DeletionChromosomes, FungalFusariumGreen Fluorescent ProteinsLuminescent ProteinsPlant DiseasesRed Fluorescent ProteinTranscription FactorsVirulenceGreen Fluorescent ProteinsLuminescent ProteinsRed Fluorescent ProteinTranscription Factors

Identifiers

PMID32452643
PMCPMC7818268
OpenAlexW3032168668

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.