Evidence map›Paper›PMID 32451684›Full record

ArticleCurrent microbiology2020

Isolation and Complete Genome Sequence of a Novel Cyanophage S-B68.

Liyang Huang, Qian Liu, Xinxin Liu, Qi Wang, Qiannan Zhao, Min Wang, Hongbing Shao, Cui Guo, Yantao Liang, Yong Jiang

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Article in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Liyang HuangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Qian LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Xinxin LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Qi WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Qiannan ZhaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Min WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Hongbing ShaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Cui GuoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yantao LiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yong JiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. yongjiang@ouc.edu.cn.ORCID http://orcid.org/0000-0001-6055-488X

Funding

Fundamental Research Funds from the Central University of Ocean University of China 201812002, 201762017 and 201562018Shandong Province for Pilot National Laboratory for Marine Science and Technology 2018SDKJ0406-6 and 2018SDKJ0104-4the National Key Research and Development Program of China 2018YFC1406704 and 2017YFA0603200the National Natural Science Foundation of China 31500339 and 41076088
6 · The paper itself

Abstract

Cyanophages, which play a significant role in food web and global biochemical cycle, are one of the main causes of microbial death in aquatic environment. A novel cyanophage S-B68 was isolated from the surface water of the Bohai Sea, northern China. It can infect marine Synechococcus sp. (strain WH7803). The transmission electron microscopy results demonstrate that this cyanophage has an icosahedral head (51 nm in diameter) and a long tail (110 nm in length) and belongs to family Siphophages. The complete genome sequence of cyanophage S-B68 contains a linear, double-stranded 163,982 bp DNA molecule with a 51.7% G+C content. Except for four tRNAs, the genome contains 229 open reading frames (ORFs) which were grouped into six functional modules as follows: structure, hypothetical protein, DNA replication and expression, lysis, packaging, and some additional functions. It was found in one-step growth curve that the latent period of the S-B68 was about 49 h after infection with Synechococcus, and then it entered the rising period, and tended to stable after 61 h. Using the BLASTN tool in the NCBI database for genome comparison, there was no significant similarity between S-B68 and other known cyanophages. Present study adds a novel Siphoviridae genome to marine cyanophage dataset and provides useful basic information for its further research.

Indexed as

BacteriophagesSiphoviridaeBase CompositionChinaGenome, ViralOpen Reading Frames

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.