Evidence map›Paper›PMID 32451522›Full record

ArticleSoft matter2021

Lipidomic atlas of mammalian cell membranes reveals hierarchical variation induced by culture conditions, subcellular membranes, and cell lineages.

Jessica L Symons, Kwang-Jin Cho, Jeffrey T Chang, Guangwei Du, M Neal Waxham, John F Hancock, Ilya Levental, Kandice R Levental

Open access · hybridAbstract read
In one paragraph

Article in Soft matter, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 121 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jessica L SymonsDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Suite 4.202, 6431 Fannin St, Houston, TX 77030, USA. ilya.levental@uth.tmc.edu kandice.r.levental@uth.tmc.edu.
Kwang-Jin ChoDepartment of Biochemistry and Molecular Biology, Wright State University, Dayton, OH, USA.
Jeffrey T ChangDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Suite 4.202, 6431 Fannin St, Houston, TX 77030, USA. ilya.levental@uth.tmc.edu kandice.r.levental@uth.tmc.edu.
Guangwei DuDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Suite 4.202, 6431 Fannin St, Houston, TX 77030, USA. ilya.levental@uth.tmc.edu kandice.r.levental@uth.tmc.edu.ORCID http://orcid.org/0000-0003-4193-6975
M Neal WaxhamDepartment of Neurobiology and Anatomy, University of Texas Health Science Center at Houston, Houston, TX, USA.
John F HancockDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Suite 4.202, 6431 Fannin St, Houston, TX 77030, USA. ilya.levental@uth.tmc.edu kandice.r.levental@uth.tmc.edu.
Ilya LeventalDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Suite 4.202, 6431 Fannin St, Houston, TX 77030, USA. ilya.levental@uth.tmc.edu kandice.r.levental@uth.tmc.edu.ORCID http://orcid.org/0000-0002-1206-9545
Kandice R LeventalDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Suite 4.202, 6431 Fannin St, Houston, TX 77030, USA. ilya.levental@uth.tmc.edu kandice.r.levental@uth.tmc.edu.ORCID http://orcid.org/0000-0002-2234-3683
The University of Texas Health Science Center at Houston · USWright State University · US

Funding

HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
The functional organization of mammalian membranes-Equipment SupplementR35GM134949 · NIGMS · UNIVERSITY OF VIRGINIA · PI Ilya Levental · 2020 to 2026
$3.8M
Lipidomic, biophysical, and functional differentiation of Mesenchymal Stem Cell membranesR01GM114282 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LEVENTAL, ILYA · 2015 to 2019
$1.7M
Effects of lipidomic diversity on GPCRR01GM120351 · NIGMS · UNIVERSITY OF DELAWARE · PI LYMAN, EDWARD RAY · 2017 to 2021
$1.6M
Structural determinants and functional consequences of protein partitioning to ordered membrane microdomains.R01GM124072 · NIGMS · UNIVERSITY OF VIRGINIA · PI LEVENTAL, ILYA · 2017 to 2019
$961k
Compositional, biophysical, and functional consequences of membrane scrambling in immune cellsR21AI146880 · NIAID · UNIVERSITY OF VIRGINIA · PI LEVENTAL, ILYA · 2020 to 2021
$444k
NIAID NIH HHS R21 AI146880NIGMS NIH HHS R01 GM114282NIGMS NIH HHS R01 GM120351NIGMS NIH HHS R01 GM124072NIGMS NIH HHS R35 GM134949NIGMS NIH HHS T32 GM008280
6 · The paper itself

Abstract

Lipid membranes are ubiquitous biological organizers, required for structural and functional compartmentalization of the cell and sub-cellular organelles. Membranes in living cells are compositionally complex, comprising hundreds of dynamically regulated, distinct lipid species. Cellular physiology requires tight regulation of these lipidomic profiles to achieve proper membrane functionality. While some general features of tissue- and organelle-specific lipid complements have been identified, less is known about detailed lipidomic variations caused by cell-intrinsic or extrinsic factors. Here, we use shotgun lipidomics to report detailed, comprehensive lipidomes of a variety of cultured and primary mammalian membrane preparations to identify trends and sources of variation. Unbiased principle component analysis (PCA) shows clear separation between cultured and primary cells, with primary erythrocytes, synaptic membranes, and other mammalian tissue lipidomes sharply diverging from all cultured cell lines and also from one other. Most broadly, cultured cell membrane preparations were distinguished by their paucity of polyunsaturated lipids. Cultured mammalian cell lines were comparatively similar to one another, although we detected clear, highly reproducible lipidomic signatures of individual cell lines and plasma membrane (PM) isolations thereof. These measurements begin to establish a comprehensive lipidomic atlas of mammalian cells and tissues, identifying some major sources of variation. These observations will allow investigation of the regulation and functional significance of mammalian lipidomes in various contexts.

Indexed as

LipidomicsLipidsAnimalsCell LineageCell MembraneLipid MetabolismMembranesLipids

Identifiers

PMID32451522
PMCPMC7688498
OpenAlexW3025463943

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.