Evidence map›Paper›PMID 32451436›Full record

ArticleNature chemistry2020

FAD-dependent enzyme-catalysed intermolecular [4+2] cycloaddition in natural product biosynthesis.

Lei Gao, Cong Su, Xiaoxia Du, Ruishan Wang, Shuming Chen, Yu Zhou, Chengwei Liu, Xiaojing Liu, Runze Tian, Liyun Zhang and 13 more

Abstract read
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Article in Nature chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 157 citations in OpenAlex.

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  18. Chemoproteomics, A Broad Avenue to Target Deconvolution.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 3 countries.

Lei Gao *State Key Laboratory of Bioactive Substance and Function of Natural Medicines; CAMS Key Laboratory of Enzyme and Biocatalysis of Natural Drugs, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Cong Su *State Key Laboratory of Bioactive Substance and Function of Natural Medicines; CAMS Key Laboratory of Enzyme and Biocatalysis of Natural Drugs, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Xiaoxia Du *Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.
Ruishan Wang *State Key Laboratory Breeding Base of Dao-di Herbs, National Resources Center of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China.
Shuming ChenDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA.
Yu ZhouNational Institute of Biological Sciences (NIBS), Beijing, China.
Chengwei LiuDivision of Chemistry, Graduate School of Science, Hokkaido University, Sapporo, Japan.
Xiaojing LiuBeijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.
Runze TianBeijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.
Liyun ZhangBeijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.
Kebo XieState Key Laboratory of Bioactive Substance and Function of Natural Medicines; CAMS Key Laboratory of Enzyme and Biocatalysis of Natural Drugs, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
She ChenNational Institute of Biological Sciences (NIBS), Beijing, China.
Qianqian GuoBeijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China.
Lanping GuoState Key Laboratory Breeding Base of Dao-di Herbs, National Resources Center of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China.
Yoshio HanoFaculty of Pharmaceutical Sciences, Teikyo Heisei University, Tokyo, Japan.
Manabu ShimazakiFaculty of Pharmaceutical Sciences, Teikyo Heisei University, Tokyo, Japan.ORCID http://orcid.org/0000-0002-7075-5455
Atsushi MinamiDivision of Chemistry, Graduate School of Science, Hokkaido University, Sapporo, Japan.ORCID http://orcid.org/0000-0002-4183-0268
Hideaki OikawaDivision of Chemistry, Graduate School of Science, Hokkaido University, Sapporo, Japan.ORCID http://orcid.org/0000-0002-6947-3397
Niu HuangNational Institute of Biological Sciences (NIBS), Beijing, China.ORCID http://orcid.org/0000-0002-6912-033X
K N HoukDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-8387-5261
Luqi HuangState Key Laboratory Breeding Base of Dao-di Herbs, National Resources Center of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China. huangluqi01@126.com.ORCID http://orcid.org/0000-0002-2070-4318
Jungui DaiState Key Laboratory of Bioactive Substance and Function of Natural Medicines; CAMS Key Laboratory of Enzyme and Biocatalysis of Natural Drugs, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China. jgdai@imm.ac.cn.ORCID http://orcid.org/0000-0003-2989-9016
Xiaoguang LeiBeijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China. xglei@pku.edu.cn.ORCID http://orcid.org/0000-0002-0380-8035
Chinese Academy of Medical Sciences & Peking Union Medical College · CNPeking University · CNHokkaido University · JPUniversity of California, Los Angeles · USNational Institute of Biological Sciences, Beijing · CNTeikyo Heisei University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Diels-Alder reaction is one of the most powerful and widely used methods in synthetic chemistry for the stereospecific construction of carbon-carbon bonds. Despite the importance of Diels-Alder reactions in the biosynthesis of numerous secondary metabolites, no naturally occurring stand-alone Diels-Alderase has been demonstrated to catalyse intermolecular Diels-Alder transformations. Here we report a flavin adenine dinucleotide-dependent enzyme, Morus alba Diels-Alderase (MaDA), from Morus cell cultures, that catalyses an intermolecular [4+2] cycloaddition to produce the natural isoprenylated flavonoid chalcomoracin with a high efficiency and enantioselectivity. Density functional theory calculations and preliminary measurements of the kinetic isotope effects establish a concerted but asynchronous pericyclic pathway. Structure-guided mutagenesis and docking studies demonstrate the interactions of MaDA with the diene and dienophile to catalyse the [4+2] cycloaddition. MaDA exhibits a substrate promiscuity towards both dienes and dienophiles, which enables the expedient syntheses of structurally diverse natural products. We also report a biosynthetic intermediate probe (BIP)-based target identification strategy used to discover MaDA.

Indexed as

BenzofuransBiocatalysisBiological ProductsCyclizationCycloaddition ReactionLyasesMolecular StructureMorusOxidoreductasesStereoisomerismSubstrate SpecificityBenzofuransBiological ProductschalcomoracinLyasesOxidoreductases

Identifiers

PMID32451436
OpenAlexW3026072135

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.