Evidence map›Paper›PMID 32448937›Full record

ArticleAMB Express2020

Metabolic enzyme clustering by coiled coils improves the biosynthesis of resveratrol and mevalonate.

Tina Fink, Bojana Stevović, René Verwaal, Johannes A Roubos, Rok Gaber, Mojca Benčina, Roman Jerala, Helena Gradišar

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Denovo Production of Resveratrol by Engineered Rice Wine StrainJournal of fungi (Basel, Switzerland) · 2024
    Article
  5. Article
  6. Application of artificial scaffold systems in microbial metabolic engineering.Frontiers in bioengineering and biotechnology · 2023
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Tina FinkDepartment of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0001-9907-8948
Bojana StevovićDepartment of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.
René VerwaalDSM Biotechnology Center, DSM, Delft, The Netherlands.ORCID http://orcid.org/0000-0003-1604-5839
Johannes A RoubosDSM Biotechnology Center, DSM, Delft, The Netherlands.
Rok GaberDepartment of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.
Mojca BenčinaDepartment of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0002-3644-9948
Roman JeralaDepartment of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia. roman.jerala@ki.si.ORCID http://orcid.org/0000-0002-6337-5251
Helena GradišarDepartment of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia. helena.gradisar@ki.si.ORCID http://orcid.org/0000-0003-4368-7474
EN-FIST Centre of Excellence (Slovenia) · SINational Institute of Chemistry · SIDSM (Netherlands) · NL

Funding

International Center for Genetic Engineering and Biotechnology CRP/SLO14-03Javna Agencija za Raziskovalno Dejavnost RS program P4-0176Javna Agencija za Raziskovalno Dejavnost RS project J3-7034Javna Agencija za Raziskovalno Dejavnost RS project L4-6812
6 · The paper itself

Abstract

The clustering of biosynthetic enzymes is used in nature to channel reaction products and increase the yield of compounds produced by multiple reaction steps. The coupling of multiple enzymes has been shown to increase the biosynthetic product yield. Different clustering strategies have particular advantages as the spatial organization of multiple enzymes creates biocatalytic cascades with a higher efficiency of biochemical reaction. However, there are also some drawbacks, such as misfolding and the variable stability of interaction domains, which may differ between particular biosynthetic reactions and the host organism. Here, we compared different protein-based clustering strategies, including direct fusion, fusion mediated by intein, and noncovalent interactions mediated through small coiled-coil dimer-forming domains. The clustering of enzymes through orthogonally designed coiled-coil interaction domains increased the production of resveratrol in Escherichia coli more than the intein-mediated fusion of biosynthetic enzymes. The improvement of resveratrol production correlated with the stability of the coiled-coil dimers. The coiled-coil fusion-based approach also increased mevalonate production in Saccharomyces cerevisiae, thus demonstrating the wider applicability of this strategy.

Indexed as

BiosynthesisDesigned coiled-coil dimersEnzyme clusteringMevalonateResveratrol

Identifiers

PMID32448937
PMCPMC7246283
OpenAlexW3027455414

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.