Evidence map›Paper›PMID 32447492›Full record

ArticleVirchows Archiv : an international journal of pathology2020

Testing for ROS1, ALK, MET, and HER2 rearrangements and amplifications in a large series of biliary tract adenocarcinomas.

Jeremy Augustin, Caroline Gabignon, Aurélie Scriva, Laëtitia Menu, Claire Calmel, Olivier Scatton, François Paye, Jean-François Fléjou, Françoise Praz, Pascale Cervera and 1 more

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In one paragraph

Article in Virchows Archiv : an international journal of pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  6. In Reply.The oncologist · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jeremy AugustinService d'Anatomie et Cytologie Pathologiques, AP-HP, Hôpital Saint Antoine, 75012, Paris, France.
Caroline GabignonService d'Anatomie et Cytologie Pathologiques, AP-HP, Hôpital Saint Antoine, 75012, Paris, France.
Aurélie ScrivaService d'Anatomie et Cytologie Pathologiques, AP-HP, Hôpital Saint Antoine, 75012, Paris, France.
Laëtitia MenuINSERM UMR_S 938, Centre de Recherche Saint-Antoine (CRSA), Faculté de Médecine Sorbonne Université, 75012, Paris, France.
Claire CalmelINSERM UMR_S 938, Centre de Recherche Saint-Antoine (CRSA), Faculté de Médecine Sorbonne Université, 75012, Paris, France.
Olivier ScattonINSERM UMR_S 938, Centre de Recherche Saint-Antoine (CRSA), Faculté de Médecine Sorbonne Université, 75012, Paris, France.
François PayeINSERM UMR_S 938, Centre de Recherche Saint-Antoine (CRSA), Faculté de Médecine Sorbonne Université, 75012, Paris, France.
Jean-François FléjouService d'Anatomie et Cytologie Pathologiques, AP-HP, Hôpital Saint Antoine, 75012, Paris, France.
Françoise PrazINSERM UMR_S 938, Centre de Recherche Saint-Antoine (CRSA), Faculté de Médecine Sorbonne Université, 75012, Paris, France.
Pascale CerveraService d'Anatomie et Cytologie Pathologiques, AP-HP, Hôpital Saint Antoine, 75012, Paris, France. pascale.cervera@aphp.fr.ORCID https://orcid.org/0000-0001-6048-2214
Dominique WendumService d'Anatomie et Cytologie Pathologiques, AP-HP, Hôpital Saint Antoine, 75012, Paris, France.
Inserm · FRSorbonne Université · FRCentre National de la Recherche Scientifique · FR

Funding

Association Française pour l'Etude du Foie AAP 2014- R14192DD
6 · The paper itself

Abstract

Biliary tract carcinomas are divided into intrahepatic, perihilar, distal extrahepatic cholangiocarcinomas, and gallbladder adenocarcinomas. Therapies targeting ROS1, ALK, MET, and HER2 alterations are currently evaluated in clinical trials. We assessed ROS1 and ALK translocations/amplifications as well as MET and HER2 amplifications for each tumor subtype by fluorescent in situ hybridization (FISH) and immunohistochemistry (IHC) in 73 intrahepatic, 40 perihilar bile duct, 36 distal extrahepatic cholangiocarcinomas, and 45 gallbladder adenocarcinomas (n = 194). By FISH, we detected targetable alterations in 5.2% of cases (n = 10): HER2 and MET amplifications were found in 4.1% (n = 8) and 1.0% (n = 2), respectively. The HER2-amplified cases were mostly gallbladder adenocarcinomas (n = 5). The MET- and HER2-amplified cases were all positive by IHC. Fourteen cases without MET amplification were positive by IHC, whereas HER2 over-expression was detected by IHC only in HER2-amplified cases. We detected no ALK or ROS1 translocation or amplification. Several alterations were consistent with aneuploidy: 24 cases showed only one copy of ROS1 gene, 4 cases displayed a profile of chromosomal instability, and an over-representation of centromeric alpha-satellite sequences was found in five cases. We confirm a relatively high rate of HER2 amplifications in gallbladder adenocarcinomas and the efficacy of IHC to screen these cases. Our results also suggest the value of IHC to screen MET amplification. Contrary to initial publications, ROS1 rearrangements seem to be very rare in biliary tract adenocarcinomas. We confirm a relatively high frequency of aneuploidy and chromosomal instability and reveal the over-representation of centromeric alpha-satellite sequences in intrahepatic cholangiocarcinomas.

Indexed as

AdenocarcinomaAdenocarcinoma of LungAnaplastic Lymphoma KinaseBiliary TractErb-b2 Receptor Tyrosine KinasesGene RearrangementHumansIn Situ Hybridization, FluorescenceLung NeoplasmsProtein-Tyrosine KinasesProto-Oncogene ProteinsProto-Oncogene Proteins c-metALK protein, humanAnaplastic Lymphoma KinaseERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesMET protein, humanProtein-Tyrosine KinasesProto-Oncogene ProteinsProto-Oncogene Proteins c-metROS1 protein, humanBiliary tract adenocarcinomaFluorescent in situ hybridizationHER2ImmunohistochemistryMETROS1

Identifiers

PMID32447492
OpenAlexW3026641008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.