Evidence map›Paper›PMID 32444977›Full record

ArticleMolecular biology reports2020

Identification and expression analysis of auxin-responsive GH3 family genes in Chinese hickory (Carya cathayensis) during grafting.

Dongbin Xu, Ying Yang, Shenchen Tao, Yanling Wang, Huwei Yuan, Anket Sharma, Xiaofei Wang, Chenjia Shen, Daoliang Yan, Bingsong Zheng

Abstract read
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Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Dongbin XuState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Ying YangState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Shenchen TaoState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Yanling WangState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Huwei YuanState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Anket SharmaState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Xiaofei WangState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Chenjia ShenCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, People's Republic of China.
Daoliang YanState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China. liangsie@zafu.edu.cn.
Bingsong ZhengState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China. bszheng@zafu.edu.cn.ORCID http://orcid.org/0000-0001-6185-5641
Zhejiang A & F University · CNHangzhou Normal University · CN

Funding

Fruit Innovation Team Project of Zhejiang Province 2016C02052-12Independent Research Project of State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University ZY20180208Independent Research Project of State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University ZY20180308Jiangsu Provincial Key Research and Development Program (CN) 2018YFD1000604Key Agricultural New Varieties Breeding Projects founded by Zhejiang Province Science and Technology Department 2016C02052-13Key Research and Development Program of Zhejiang Province 2018C02004National High Technology Research and Development Program of China (863 Program) 2013AA102605National Key Research and Development Program of China 2018YFD1000600National Natural Science Foundation of China 31070604National Natural Science Foundation of China 31270716National Natural Science Foundation of China 31470683National Natural Science Foundation of China 31901346National Natural Science Foundation of China 31971695Natural Science Foundation of Zhejiang Province LZ18C160001Open Foundation of First-class Discipline of Forestry, Zhejiang Province 201703Overseas Expertise Introduction Project for Discipline Innovation 111 Project D18008Scientific Research Foundation of Zhejiang A and F University (CN) KF201708The First-class General Financial Grant from the China Postdoctoral Science Foundation 2017M610377Zhejiang Provincial Natural Science Foundation for Distinguished Young Scholar LR13C160001
6 · The paper itself

Abstract

The GH3 genes play vital roles in auxin homeostasis by conjugating excess auxin to amino acids. However, how GH3 genes function during grafting in Chinese hickory (Carya cathayensis) is largely unknown. Here, based on the transcriptome database, a comprehensive identification and expression profiling analysis of 12 GH3 genes in Chinese hickory were performed. Phylogenetic analysis indicated that CcGH3-x exists in a specific subfamily. To understand the roles of CcGH3 genes, tissue-specific expression and the response to different phytohormones were determined. Expression profiles of GH3 genes of Chinese hickory during grafting were analysed. The data suggested that 10 CcGH3 genes were down-regulated at an early stage of grafting, indicating that auxin homeostasis regulated by the CcGH3 family might be inhibited at initial stages. At the completion of grafting, expression levels of members of the CcGH3 family were restored to normal levels. Endogenous auxin levels were also measured, and the data showed that free auxin decreased to the lowest level at an early stage of grafting, and then increased during grafting. Auxin amino acid conjugation increased at an early stage of grafting in rootstock, and then decreased with progression of the graft union. Our results demonstrate that the reduced expression of CcGH3 family genes during grafting might contribute to the release of free auxin, making an important contribution to the recovery of auxin levels after grafting.

Indexed as

ArabidopsisArabidopsis ProteinsCaryaChinaGene Expression Regulation, PlantGenes, PlantIndoleacetic AcidsLigasesPhylogenyPlant Growth RegulatorsPlant ProteinsTranscriptomeArabidopsis ProteinsGH3.9 protein, ArabidopsisIndoleacetic AcidsLigasesPlant Growth RegulatorsPlant ProteinsAuxinChinese hickoryGH3GraftHomeostasis

Identifiers

PMID32444977
OpenAlexW3026770751

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.