Evidence map›Paper›PMID 32444850›Full record

ArticleNature biotechnology2020

Visualizing and interpreting cancer genomics data via the Xena platform.

Mary J Goldman, Brian Craft, Mim Hastie, Kristupas Repečka, Fran McDade, Akhil Kamath, Ayan Banerjee, Yunhai Luo, Dave Rogers, Angela N Brooks and 2 more

Abstract readLetter
In one paragraph

Article in Nature biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2,924 papers.

0numbers the graph read from it
0cells of the map it votes in
2,924citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2,924 citing papers in PubMed.

  1. Host andGut microbes · 2026
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  9. IL-1β/IL-6 inflammatory crosstalk drives DNA methylation and histone remodeling associated with cytokine induced senescence in luminal breast cancer.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
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2,864 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Mary J Goldman *UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA. mary@soe.ucsc.edu.ORCID http://orcid.org/0000-0002-9808-6388
Brian Craft *UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0003-3334-6983
Mim HastieClever Canary, New York, NY, USA.
Kristupas RepečkaVilnius University, Vilnius, Lithuania.
Fran McDadeClever Canary, New York, NY, USA.
Akhil KamathBirla Institute of Technology and Science, Goa, India.
Ayan BanerjeeNational Institute of Technology, Durgapur, India.
Yunhai LuoDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-6948-2042
Dave RogersClever Canary, New York, NY, USA.
Angela N BrooksUC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0002-7898-3073
Jingchun ZhuUC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.
David HausslerUC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.

Funding

Visualization hub for genomics data exploration and translational discoveryU24CA210974 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI COLLISSON, ERIC, HAUSSLER, DAVID H · 2016 to 2020
$4.2M
Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC CancU24CA180951 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H · 2013 to 2017
$2.9M
NCI NIH HHS U24 CA180951NCI NIH HHS U24 CA210974
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

SoftwareDatabases, GeneticGenomicsHumansNeoplasms

Identifiers

PMID32444850
PMCPMC7386072

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.