Evidence map›Paper›PMID 32444687›Full record

ArticleScientific reports2020

Premature termination codon readthrough in Drosophila varies in a developmental and tissue-specific manner.

Yanan Chen, Tianhui Sun, Zhuo Bi, Jian-Quan Ni, Jose C Pastor-Pareja, Babak Javid

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Regulatory landscape of widespread stop codon readthrough inbioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Emerging Role of GCN1 in Disease and Homeostasis.International journal of molecular sciences · 2024
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Tissue-specific dynamic codon redefinition inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yanan ChenCenter for Global Health and Infectious Disease Research, Collaborative Innovation Center for the Diagnosis and Treatment of Infectious Diseases, Tsinghua University School of Medicine, Beijing, 100084, China.
Tianhui SunSchool of Life Sciences, Tsinghua University, Beijing, 100084, China.
Zhuo BiCenter for Global Health and Infectious Disease Research, Collaborative Innovation Center for the Diagnosis and Treatment of Infectious Diseases, Tsinghua University School of Medicine, Beijing, 100084, China.
Jian-Quan NiTsinghua University School of Medicine, Beijing, 100084, China.
Jose C Pastor-ParejaSchool of Life Sciences, Tsinghua University, Beijing, 100084, China. jose.pastor@biomed.tsinghua.edu.cn.
Babak JavidCenter for Global Health and Infectious Disease Research, Collaborative Innovation Center for the Diagnosis and Treatment of Infectious Diseases, Tsinghua University School of Medicine, Beijing, 100084, China. bjavid@gmail.com.
Tsinghua University · CNBeijing Advanced Sciences and Innovation Center · CNCenter for Life Sciences · CN

Funding

Wellcome Trust
6 · The paper itself

Abstract

Despite their essential function in terminating translation, readthrough of stop codons occurs more frequently than previously supposed. However, little is known about the regulation of stop codon readthrough by anatomical site and over the life cycle of animals. Here, we developed a set of reporters to measure readthrough in Drosophila melanogaster. A focused RNAi screen in whole animals identified upf1 as a mediator of readthrough, suggesting that the stop codons in the reporters were recognized as premature termination codons (PTCs). We found readthrough rates of PTCs varied significantly throughout the life cycle of flies, being highest in older adult flies. Furthermore, readthrough rates varied dramatically by tissue and, intriguingly, were highest in fly brains, specifically neurons and not glia. This was not due to differences in reporter abundance or nonsense-mediated mRNA decay (NMD) surveillance between these tissues. Readthrough rates also varied within neurons, with cholinergic neurons having highest readthrough compared with lowest readthrough rates in dopaminergic neurons. Overall, our data reveal temporal and spatial variation of PTC-mediated readthrough in animals, and suggest that readthrough may be a potential rescue mechanism for PTC-harboring transcripts when the NMD surveillance pathway is inhibited.

Indexed as

Codon, TerminatorGene Expression Regulation, DevelopmentalProtein BiosynthesisAnimalsDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianFemaleGene Expression ProfilingMaleOrgan SpecificityCodon, TerminatorDrosophila Proteins

Identifiers

PMID32444687
PMCPMC7244557
OpenAlexW3028071540

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.