Evidence map›Paper›PMID 32444465›Full record

ArticleCancer discovery2020

Posttranslational Regulation of the Exon Skipping Machinery Controls Aberrant Splicing in Leukemia.

Yalu Zhou, Cuijuan Han, Eric Wang, Adam H Lorch, Valentina Serafin, Byoung-Kyu Cho, Blanca T Gutierrez Diaz, Julien Calvo, Celestia Fang, Alireza Khodadadi-Jamayran and 34 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 100 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. RNA splicing in health and disease.Molecular biomedicine · 2026
    Review
  4. Haematologica · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Autoregulated splicing ofScience (New York, N.Y.) · 2024
    Article
  16. Article
  17. Review
  18. SR proteins in cancer: function, regulation, and small inhibitor.Cellular & molecular biology letters · 2024
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 10 institutions in 5 countries.

Yalu ZhouDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Cuijuan HanDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Eric WangDepartment of Pathology and Laura & Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, New York.
Adam H LorchDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Valentina SerafinOncohematology Laboratory, Department of Women's and Children's Health, University of Padova, Padova, Italy.
Byoung-Kyu ChoProteomics Center of Excellence, Northwestern University, Evanston, Illinois.ORCID 0000-0003-3370-6985
Blanca T Gutierrez DiazDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Julien CalvoTeam Niche and Cancer in hematopoiesis, CEA, Fontenay-aux-Roses, France.
Celestia FangDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Alireza Khodadadi-JamayranApplied Bioinformatics Laboratories, Office of Science and Research, New York University School of Medicine, New York, New York.
Tommaso TabaglioInstitute of Molecular and Cell Biology, Agency for Science, Technology and Research, Singapore.ORCID 0000-0001-6873-3073
Christian MarierGenome Technology Center, New York University School of Medicine, New York, New York.
Anna KuchmiyCancer Research Institute Ghent (CRIG), Ghent, Belgium.ORCID 0000-0001-7277-736X
Limin SunDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
George YacuDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Szymon K FilipProteomics Center of Excellence, Northwestern University, Evanston, Illinois.
Qi JinDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.ORCID 0000-0001-8872-9266
Yoh-Hei TakahashiDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
David R AmiciDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.ORCID 0000-0003-3318-964X
Emily J RendlemanDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.ORCID 0000-0002-0125-3718
Radhika RawatDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Silvia BresolinOncohematology Laboratory, Department of Women's and Children's Health, University of Padova, Padova, Italy.
Maddalena PaganinOncohematology Laboratory, Department of Women's and Children's Health, University of Padova, Padova, Italy.
Cheng ZhangDepartment of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota.
Hu LiDepartment of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota.
Irawati KandelaCenter for Developmental Therapeutics, Northwestern University, Evanston, Illinois.
Yuliya PolitanskaDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Hiam Abdala-ValenciaDepartment of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Marc L MendilloDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Ping ZhuH3 Biomedicine, Inc., Cambridge, Massachusetts.
Bruno PalhaisCancer Research Institute Ghent (CRIG), Ghent, Belgium.
Pieter Van VlierbergheCancer Research Institute Ghent (CRIG), Ghent, Belgium.
Tom TaghonCancer Research Institute Ghent (CRIG), Ghent, Belgium.ORCID 0000-0002-5781-0288
Iannis AifantisDepartment of Pathology and Laura & Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, New York.
Young Ah GooDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.ORCID 0000-0002-8278-3621
Ernesto GuccioneDepartment of Oncological Sciences and Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, New York.
Adriana HeguyDepartment of Pathology and Laura & Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, New York.
Aristotelis TsirigosDepartment of Pathology and Laura & Isaac Perlmutter Cancer Center, New York University School of Medicine, New York, New York.ORCID 0000-0002-7512-8477
Keng Boon WeeApplied Bioinformatics Laboratories, Office of Science and Research, New York University School of Medicine, New York, New York.
Rama K MishraDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois.
Francoise PflumioTeam Niche and Cancer in hematopoiesis, CEA, Fontenay-aux-Roses, France.
Benedetta AccordiOncohematology Laboratory, Department of Women's and Children's Health, University of Padova, Padova, Italy.
Giuseppe BassoOncohematology Laboratory, Department of Women's and Children's Health, University of Padova, Padova, Italy.ORCID 0000-0002-2634-9302
Panagiotis NtziachristosDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois. pntziachr@gmail.com.
Northwestern University · USNew York University · USUniversity of Padua · ITUniversity College Ghent · BEAgency for Science, Technology and Research · SGCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRMayo Clinic · USGhent University Hospital · BEInstitute for Biomedicine · ITTisch Hospital · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008152 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ARDEHALI, HOSSEIN · 1987 to 2021
$24.0M
The impact of changes in chromatin architecture on cancer phenotypes and tumor progressionP01CA229086 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Jane Amanda Skok · 2019 to 2026
$17.0M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Medical Scientist Training ProgramT32GM144295 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ALAN R HAUSER · 2022 to 2026
$9.1M
CARCINOGENESIS TRAINING PROGRAMT32CA009560 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Kathleen Janee Green · 1986 to 2026
$8.4M
The cohesin complex as a tumor suppressor in myeloid leukemiaR01CA216421 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS, LEVINE, ROSS L · 2017 to 2021
$2.5M
Mechanisms of enhancer regulation in leukemiaR01CA228135 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS · 2019 to 2023
$2.5M
Acquisition of a Thermo Fisher Scientific Q Exactive UHMR mass spectrometerS10OD025194 · OD · NORTHWESTERN UNIVERSITY · PI COMPTON, PHILIP DANIEL · 2018 to 2018
$795k
Exploring a new therapeutic approach through targeting epigenetic enzymes in ALLR00CA188293 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI NTZIACHRISTOS, PANAGIOTIS · 2015 to 2017
$747k
Elucidating the stress response regulatory networks that enable malignancyR00CA175293 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MENDILLO, MARC · 2016 to 2018
$747k
NCI NIH HHS P01 CA229086NCI NIH HHS P30 CA016087NCI NIH HHS P30 CA060553NCI NIH HHS R00 CA175293NCI NIH HHS R00 CA188293NCI NIH HHS R01 CA216421NCI NIH HHS R01 CA228135NCI NIH HHS R01 CA248770NCI NIH HHS T32 CA009560NIGMS NIH HHS P41 GM108569NIGMS NIH HHS T32 GM008152NIGMS NIH HHS T32 GM144295NIH HHS S10 OD023423NIH HHS S10 OD025194
6 · The paper itself

Abstract

Splicing alterations are common in diseases such as cancer, where mutations in splicing factor genes are frequently responsible for aberrant splicing. Here we present an alternative mechanism for splicing regulation in T-cell acute lymphoblastic leukemia (T-ALL) that involves posttranslational stabilization of the splicing machinery via deubiquitination. We demonstrate there are extensive exon skipping changes in disease, affecting proteasomal subunits, cell-cycle regulators, and the RNA machinery. We present that the serine/arginine-rich splicing factors (SRSF), controlling exon skipping, are critical for leukemia cell survival. The ubiquitin-specific peptidase 7 (USP7) regulates SRSF6 protein levels via active deubiquitination, and USP7 inhibition alters the exon skipping pattern and blocks T-ALL growth. The splicing inhibitor H3B-8800 affects splicing of proteasomal transcripts and proteasome activity and acts synergistically with proteasome inhibitors in inhibiting T-ALL growth. Our study provides the proof-of-principle for regulation of splicing factors via deubiquitination and suggests new therapeutic modalities in T-ALL. SIGNIFICANCE: Our study provides a new proof-of-principle for posttranslational regulation of splicing factors independently of mutations in aggressive T-cell leukemia. It further suggests a new drug combination of splicing and proteasomal inhibitors, a concept that might apply to other diseases with or without mutations affecting the splicing machinery.

Indexed as

Alternative SplicingAnimalsAntineoplastic Combined Chemotherapy ProtocolsDrug SynergismExonsHumansJurkat CellsMaleMicePhosphoproteinsPiperazinesPrecursor T-Cell Lymphoblastic Leukemia-LymphomaProof of Concept StudyProteasome Endopeptidase ComplexProteasome InhibitorsPyridinesH3B-8800PhosphoproteinsPiperazinesProteasome Endopeptidase ComplexProteasome InhibitorsPyridinesSerine-Arginine Splicing FactorsSRSF6 protein, humanUbiquitin-Specific Peptidase 7USP7 protein, human

Identifiers

PMID32444465
PMCPMC7483384
OpenAlexW3027939732

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.