Evidence map›Paper›PMID 32444138›Full record

ArticleBiochemical and biophysical research communications2020

Role of Arabidopsis INDOLE-3-ACETIC ACID CARBOXYL METHYLTRANSFERASE 1 in auxin metabolism.

Eiko Takubo, Makoto Kobayashi, Shoko Hirai, Yuki Aoi, Chennan Ge, Xinhua Dai, Kosuke Fukui, Ken-Ichiro Hayashi, Yunde Zhao, Hiroyuki Kasahara

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Mechanisms of auxin action in plant growth and development.Nature reviews. Molecular cell biology · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Chemical inhibition of the auxin inactivation pathway uncovers the roles of metabolic turnover in auxin homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Auxin methylation byProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. A 24,482-bp deletion is associated with increased seed weight in Brassica napus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  12. Auxin Metabolism in Plants.Cold Spring Harbor perspectives in biology · 2021
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Eiko TakuboDepartment of Bioregulation and Biointeraction, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Makoto KobayashiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.
Shoko HiraiDepartment of Bioregulation and Biointeraction, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Yuki AoiDepartment of Biological Production Science, United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Chennan GeSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093-0116, USA.
Xinhua DaiSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093-0116, USA.
Kosuke FukuiDepartment of Biochemistry, Okayama University of Science, Okayama, 700-0005, Japan.
Ken-Ichiro HayashiDepartment of Biochemistry, Okayama University of Science, Okayama, 700-0005, Japan.
Yunde ZhaoSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA, 92093-0116, USA.
Hiroyuki KasaharaRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan; Institute of Global Innovation Research, Tokyo University of Agriculture and Technology, Fuchu, 183-8509, Japan. Electronic address: kasahara@go.tuat.ac.jp.
Tokyo University of Agriculture and Technology · JPUniversity of California San Diego · USOkayama University of Science · JPRIKEN Center for Sustainable Resource Science · JP

Funding

Molecular mechanisms of auxin-mediated plant developmentR01GM114660 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHAO, YUNDE · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM114660
6 · The paper itself

Abstract

The phytohormone auxin regulates a wide range of developmental processes in plants. Indole-3-acetic acid (IAA) is the main auxin that moves in a polar manner and forms concentration gradients, whereas phenylacetic acid (PAA), another natural auxin, does not exhibit polar movement. Although these auxins occur widely in plants, the differences between IAA and PAA metabolism remain largely unknown. In this study, we investigated the role of Arabidopsis IAA CARBOXYL METHYLTRANSFERASE 1 (IAMT1) in IAA and PAA metabolism. IAMT1 proteins expressed in Escherichia coli could convert both IAA and PAA to their respective methyl esters. Overexpression of IAMT1 caused severe auxin-deficient phenotypes and reduced the levels of IAA, but not PAA, in the root tips of Arabidopsis, suggesting that IAMT1 exclusively metabolizes IAA in vivo. We generated iamt1 null mutants via CRISPR/Cas9-mediated genome editing and found that the single knockout mutants had normal auxin levels and did not exhibit visibly altered phenotypes. These results suggest that other proteins, namely the IAMT1 homologs in the SABATH family of carboxyl methyltransferases, may also regulate IAA levels in Arabidopsis.

Indexed as

ArabidopsisArabidopsis ProteinsIndoleacetic AcidsMethylationMethyltransferasesPhenylacetatesArabidopsis ProteinsIAMT1 protein, Arabidopsisindoleacetic acidIndoleacetic AcidsMethyltransferasesPhenylacetatesphenylacetic acidAuxinIndole-3-acetic acidMetabolismMethyltransferasePhenylacetic acid

Identifiers

PMID32444138
PMCPMC7331827
OpenAlexW3026138516

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.