Evidence map›Paper›PMID 32442185›Full record

ArticlePloS one2020

Comparative transcriptomics of Diuraphis noxia and Schizaphis graminum fed wheat plants containing different aphid-resistance genes.

Lina Aguirre Rojas, Erin Scully, Laramy Enders, Alicia Timm, Deepak Sinha, Charles Michael Smith

Abstract readComparative Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lina Aguirre RojasDepartment of Entomology, Kansas State University, Manhattan, KS, United States of America.
Erin ScullyStored Product Insect and Engineering Unit, USDA-ARS Centerfor Grain and Animal Health Research, Manhattan, KS, United States of America.
Laramy EndersDepartment of Entomology, Purdue University, West Lafayette, IN, United States of America.
Alicia TimmDepartment of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO, United States of America.
Deepak SinhaDepartment of Entomology, Kansas State University, Manhattan, KS, United States of America.ORCID 0000-0002-4939-2338
Charles Michael SmithDepartment of Entomology, Kansas State University, Manhattan, KS, United States of America.ORCID 0000-0002-9809-2163

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular bases of aphid virulence to aphid crop plant resistance genes are poorly understood. The Russian wheat aphid, Diuraphis noxia, (Kurdjumov), and the greenbug, Schizaphis graminum (Rondani), are global pest of cereal crops. Each species damages barley, oat, rye and wheat, but S. graminum includes fescue, maize, rice and sorghum in its host range. This study was conducted to compare and contrast the transcriptomes of S. graminum biotype I and D. noxia biotype 1 when each ingested phloem from leaves of varieties of bread wheat, Triticum aestivum L., containing no aphid resistance (Dn0), resistance to D. noxia biotype 1 (Dn4), or resistance to both D. noxia biotype 1 and S. graminum biotype I (Dn7, wheat genotype 94M370). Gene ontology enrichments, k-means analysis and KEGG pathway analysis indicated that 94M370 plants containing the Dn7 D. noxia resistance gene from rye had stronger effects on the global transcriptional profiles of S. graminum and D. noxia relative to those fed Dn4 plants. S. graminum responds to ingestion of phloem sap from 94M370 plants by expression of unigenes coding for proteins involved in DNA and RNA repair, and delayed tissue and structural development. In contrast, D. noxia displays a completely different transcriptome after ingesting phloem sap from Dn4 or 94M370 plants, consisting of unigenes involved primarily in detoxification, nutrient acquisition and structural development. These variations in transcriptional responses of D. noxia and S. graminum suggest that the underlying evolutionary mechanism(s) of virulence in these aphids are likely species specific, even in cases of cross resistance.

Indexed as

Disease ResistanceAnimal FeedAnimalsAphidsGene Expression ProfilingGene Expression RegulationGene OntologyHerbivoryHigh-Throughput Nucleotide SequencingHordeumInsect ProteinsPlant LeavesPlant ProteinsSequence Analysis, RNASpecies SpecificityInsect ProteinsPlant Proteins

Identifiers

PMID32442185
PMCPMC7313535

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.