Evidence map›Paper›PMID 32440371›Full record

ArticlePeerJ2020

Exploring environmental coverages of species: a new variable contribution estimation methodology for rulesets from the genetic algorithm for rule-set prediction.

Anni Yang, Juan Pablo Gomez, Jason K Blackburn

Abstract read
In one paragraph

Article in PeerJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Predicting the potential distribution ofFrontiers in plant science · 2024
    Article
  3. Simulation ofFrontiers in plant science · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Predicting the Geographic Distribution of theThe American journal of tropical medicine and hygiene · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Anni YangSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA.
Juan Pablo GomezSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-4128-8739
Jason K BlackburnSpatial Epidemiology & Ecology Research Laboratory, Department of Geography, University of Florida, Gainesville, FL, USA.

Funding

Spatio-temporally explicit estimation of R0 for pathogens with environmentally-mediated transmissionR01GM117617 · NIGMS · UNIVERSITY OF FLORIDA · PI BLACKBURN, JASON K · 2015 to 2018
$1.5M
NIGMS NIH HHS R01 GM117617
6 · The paper itself

Abstract

Variable contribution estimation for, and determination of variable importance within, ecological niche models (ENMs) remain an important area of research with continuing challenges. Most ENM algorithms provide normally exhaustive searches through variable space; however, selecting variables to include in models is a first challenge. The estimation of the explanatory power of variables and the selection of the most appropriate variable set within models can be a second challenge. Although some ENMs incorporate the variable selection rubric inside the algorithms, there is no integrated rubric to evaluate the variable importance in the Genetic Algorithm for Ruleset Production (GARP). Here, we designed a novel variable selection methodology based on the rulesets generated from a GARP experiment. The importance of the variables in a GARP experiment can be estimated based on the consideration of the prevalence of each environmental variable in the dominant presence rules of the best subset of models and its coverage. We tested the performance of this variable selection method based on simulated species with both weak and strong responses to simulated environmental covariates. The variable selection method generally performed well during the simulations with over 2/3 of the trials correctly identifying most covariates. We then predict the distribution of

Indexed as

Ecological niche modelingGARPMedian rangePhysiological mechanismsPrevalenceSpatial predictionToxostoma rufumVariable contributionVariable selection

Identifiers

PMID32440371
PMCPMC7227675

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.