Evidence map›Paper›PMID 32439802›Full record

ArticleThe Journal of biological chemistry2020

Noninvasive optical detection of granzyme B from natural killer cells with enzyme-activated fluorogenic probes.

Tomasz Janiszewski, Sonia Kołt, Dion Kaiserman, Scott J Snipas, Shuang Li, Julita Kulbacka, Jolanta Saczko, Niels Bovenschen, Guy Salvesen, Marcin Drąg and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Non-Canonical Amino Acids in Analyses of Protease Structure and Function.International journal of molecular sciences · 2023
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  7. Fluorogenic Granzyme A Substrates Enable Real-Time Imaging of Adaptive Immune Cell Activity.Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 4 countries.

Tomasz JaniszewskiWroclaw University of Science and Technology, Department of Chemical Biology and Bioimaging, Wroclaw, Poland.
Sonia KołtWroclaw University of Science and Technology, Department of Chemical Biology and Bioimaging, Wroclaw, Poland.
Dion KaisermanMonash University, Monash Biomedicine Discovery Institute, Department of Biochemistry and Molecular Biology, Clayton, VIC, Australia.
Scott J SnipasSanford-Burnham Prebys Medical Discovery Institute, NCI-designated Cancer Center, La Jolla, California, USA.
Shuang LiUniversity Medical Center Utrecht, Department of Pathology, Utrecht, The Netherlands.
Julita KulbackaWroclaw Medical University, Department of Molecular and Cellular Biology, Wroclaw, Poland.ORCID 0000-0001-8272-5440
Jolanta SaczkoWroclaw Medical University, Department of Molecular and Cellular Biology, Wroclaw, Poland.
Niels BovenschenUniversity Medical Center Utrecht, Department of Pathology, Utrecht, The Netherlands.
Guy SalvesenSanford-Burnham Prebys Medical Discovery Institute, NCI-designated Cancer Center, La Jolla, California, USA.
Marcin DrągWroclaw University of Science and Technology, Department of Chemical Biology and Bioimaging, Wroclaw, Poland.
Phillip I BirdMonash University, Monash Biomedicine Discovery Institute, Department of Biochemistry and Molecular Biology, Clayton, VIC, Australia.
Paulina KasperkiewiczWroclaw University of Science and Technology, Department of Chemical Biology and Bioimaging, Wroclaw, Poland paulina.kasperkiewicz@pwr.edu.pl.ORCID 0000-0002-1291-047X
Wrocław University of Science and Technology · PLAustralian Regenerative Medicine Institute · AUSanford Burnham Prebys Medical Discovery Institute · USUniversity Medical Center Utrecht · NLWroclaw Medical University · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural killer (NK) cells are key innate immunity effectors that combat viral infections and control several cancer types. For their immune function, human NK cells rely largely on five different cytotoxic proteases, called granzymes (A/B/H/K/M). Granzyme B (GrB) initiates at least three distinct cell death pathways, but key aspects of its function remain unexplored because selective probes that detect its activity are currently lacking. In this study, we used a set of unnatural amino acids to fully map the substrate preferences of GrB, demonstrating previously unknown GrB substrate preferences. We then used these preferences to design substrate-based inhibitors and a GrB-activatable activity-based fluorogenic probe. We show that our GrB probes do not significantly react with caspases, making them ideal for in-depth analyses of GrB localization and function in cells. Using our quenched fluorescence substrate, we observed GrB within the cytotoxic granules of human YT cells. When used as cytotoxic effectors, YT cells loaded with GrB attacked MDA-MB-231 target cells, and active GrB influenced its target cell-killing efficiency. In summary, we have developed a set of molecular tools for investigating GrB function in NK cells and demonstrate noninvasive visual detection of GrB with an enzyme-activated fluorescent substrate.

Indexed as

GranzymesOptical ImagingCell Line, TumorFluorescent DyesHumansPeptidesT-LymphocytesFluorescent DyesGranzymesGZMB protein, humanPeptidesactivity-based probeamino acidgranzyme Binnate immune systemnatural killer cells (NK cells)peptideproteasequenched fluorescence assayserine proteasesubstrate specificity

Identifiers

PMID32439802
PMCPMC7363135
OpenAlexW3027017529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.