Evidence map›Paper›PMID 32438860›Full record

ArticleJournal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism2020

Genome-wide transcriptomic analysis of microglia reveals impaired responses in aged mice after cerebral ischemia.

Ligen Shi, Marcelo Rocha, Wenting Zhang, Ming Jiang, Sicheng Li, Qing Ye, Sulaiman H Hassan, Liqiang Liu, Maya N Adair, Jing Xu and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Ligen ShiDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Marcelo RochaDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.ORCID 0000-0002-4503-5827
Wenting ZhangDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Ming JiangDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Sicheng LiDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Qing YeDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Sulaiman H HassanDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Liqiang LiuDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Maya N AdairDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Jing XuDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Jianhua LuoDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA.
Xiaoming HuDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Lawrence R WechslerDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Jun ChenDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Yejie ShiDepartment of Neurology, Pittsburgh Institute of Brain Disorders & Recovery and UPMC Stroke Institute, University of Pittsburgh, Pittsburgh, PA, USA.ORCID 0000-0001-7502-9201
University of Pittsburgh · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHN C. BYRD · 1988 to 2026
$158.0M
Heat shock proteins and neuroprotection in cerebral ischemiaI01BX002495 · VA · VETERANS HEALTH ADMINISTRATION · PI CHEN, JUN · 2015 to 2020
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Novel molecular strategies to promote functional recovery after traumatic brain injuryI01BX003377 · VA · VETERANS HEALTH ADMINISTRATION · PI Jun Chen · 2017 to 2026
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BLRD VA I01 BX002495BLRD VA I01 BX003377NCI NIH HHS P30 CA047904
6 · The paper itself

Abstract

Senescence-associated alterations in microglia may have profound impact on cerebral homeostasis and stroke outcomes. However, the lack of a transcriptome-wide comparison between young and aged microglia in the context of ischemia limits our understanding of aging-related mechanisms. Herein, we performed RNA sequencing analysis of microglia purified from cerebral hemispheres of young adult (10-week-old) and aged (18-month-old) mice five days after distal middle cerebral artery occlusion or after sham operation. Considerable transcriptional differences were observed between young and aged microglia in healthy brains, indicating heightened chronic inflammation in aged microglia. Following stroke, the overall transcriptional activation was more robust (>13-fold in the number of genes upregulated) in young microglia than in aged microglia. Gene clusters with functional implications in immune inflammatory responses, immune cell chemotaxis, tissue remodeling, and cell-cell interactions were markedly activated in microglia of young but not aged stroke mice. Consistent with the genomic profiling predictions, post-stroke cerebral infiltration of peripheral immune cells was markedly decreased in aged mice compared to young mice. Moreover, post-ischemic aged microglia demonstrated reduced interaction with neighboring neurons and diminished polarity toward the infarct lesion. These alterations in microglial gene response and behavior may contribute to aging-driven vulnerability and poorer recovery after ischemic stroke.

Indexed as

AgedAnimalsBrain IschemiaDisease Models, AnimalFlow CytometryGenomicsHumansMaleMiceMicrogliaSequence Analysis, RNATranscriptomeAgingClec7aflow cytometryischemic strokepermanent cerebral ischemiaRNA sequencing

Identifiers

PMID32438860
PMCPMC7687039
OpenAlexW3026206677

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.