Evidence map›Paper›PMID 32438252›Full record

ArticleEuropean journal of medicinal chemistry2020

Chemical profiling of HIV-1 capsid-targeting antiviral PF74.

Lei Wang, Mary C Casey, Sanjeev Kumar V Vernekar, Ha T Do, Rajkumar Lalji Sahani, Karen A Kirby, Haijuan Du, Atsuko Hachiya, Huanchun Zhang, Philip R Tedbury and 3 more

Open access · greenAbstract read
In one paragraph

Article in European journal of medicinal chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

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  18. Novel HIV-1 capsid-targeting small molecules of the PF74 binding site.European journal of medicinal chemistry · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Lei WangCenter for Drug Design, College of Pharmacy, University of Minnesota, Minneapolis, MN, 55455, USA.
Mary C CaseyDepartment of Molecular Microbiology and Immunology, University of Missouri School of Medicine, Christopher S. Bond Life Sciences Center, Columbia, MO, 65211, USA.
Sanjeev Kumar V VernekarCenter for Drug Design, College of Pharmacy, University of Minnesota, Minneapolis, MN, 55455, USA.
Ha T DoCenter for Drug Design, College of Pharmacy, University of Minnesota, Minneapolis, MN, 55455, USA.
Rajkumar Lalji SahaniCenter for Drug Design, College of Pharmacy, University of Minnesota, Minneapolis, MN, 55455, USA.
Karen A KirbyLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Haijuan DuLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Atsuko HachiyaClinical Research Center, Nagoya Medical Center, National Hospital Organization, Nagoya, Aichi, 460-0001, Japan.
Huanchun ZhangLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Philip R TedburyLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Jiashu XieCenter for Drug Design, College of Pharmacy, University of Minnesota, Minneapolis, MN, 55455, USA.
Stefan G SarafianosLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Zhengqiang WangCenter for Drug Design, College of Pharmacy, University of Minnesota, Minneapolis, MN, 55455, USA. Electronic address: wangx472@umn.edu.
University of Minnesota · USEmory University · USNagoya Medical Center · JPUniversity of Missouri · US

Funding

Structural studies of HIV Capsid with host factors and Capsid-targeting antiviralsR01AI120860 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI Stefan G Sarafianos, Zhengqiang Wang · 2015 to 2026
$6.0M
NIAID NIH HHS R01 AI120860
6 · The paper itself

Abstract

The capsid protein (CA) of HIV-1 plays essential roles in multiple steps of the viral replication cycle by assembling into functional capsid core, controlling the kinetics of uncoating and nuclear entry, and interacting with various host factors. Targeting CA represents an attractive yet underexplored antiviral approach. Of all known CA-targeting small molecule chemotypes, the peptidomimetic PF74 is particularly interesting because it binds to the same pocket used by a few important host factors, resulting in highly desirable antiviral phenotypes. However, further development of PF74 entails understanding its pharmacophore and mitigating its poor metabolic stability. We report herein the design, synthesis, and evaluation of a large number of PF74 analogs aiming to provide a comprehensive chemical profiling of PF74 and advance the understanding on its detailed binding mechanism and pharmacophore. The analogs, containing structural variations mainly in the aniline domain and/or the indole domain, were assayed for their effect on stability of CA hexamers, antiviral activity, and cytotoxicity. Selected analogs were also tested for metabolic stability in liver microsomes, alone or in the presence of a CYP3A inhibitor. Collectively, our studies identified important pharmacophore elements and revealed additional binding features of PF74, which could aid in future design of improved ligands to better probe the molecular basis of CA-host factor interactions, design strategies to disrupt them, and ultimately identify viable CA-targeting antiviral leads.

Indexed as

AnimalsAnti-HIV AgentsCapsid ProteinsCell LineDose-Response Relationship, DrugHIV-1HumansIndolesMiceMicrobial Sensitivity TestsModels, MolecularMolecular StructurePhenylalanineStructure-Activity RelationshipVirus ReplicationAnti-HIV AgentsCapsid ProteinsIndolesPF-3450074PhenylalanineCapsid-targeting antiviralsHIV-1PF74

Identifiers

PMID32438252
PMCPMC7492092
OpenAlexW3024847780

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.