Evidence map›Paper›PMID 32437350›Full record

ArticlePLoS computational biology2020

Ten simple rules for making training materials FAIR.

Leyla Garcia, Bérénice Batut, Melissa L Burke, Mateusz Kuzak, Fotis Psomopoulos, Ricardo Arcila, Teresa K Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C Dimopoulos and 13 more

Abstract readEditorial
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Galaxy Training: A powerful framework for teaching!PLoS computational biology · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Trainingspace: Neuroeducation Without Borders.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Leyla GarciaZB MED Information Centre for Life Sciences, Cologne, Germany.ORCID 0000-0003-3986-0510
Bérénice BatutBioinformatics group, Department of Computer Science, University of Freiburg, Freiburg, Germany.ORCID 0000-0001-9852-1987
Melissa L BurkeEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.ORCID 0000-0002-5571-8664
Mateusz KuzakNetherlands eScience Center, Amsterdam, the Netherlands.ORCID 0000-0003-0087-6021
Fotis PsomopoulosInstitute of Applied Biosciences, Centre for Research and Technology Hellas, Thessaloniki, Greece.ORCID 0000-0002-0222-4273
Ricardo ArcilaEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.ORCID 0000-0002-8253-7375
Teresa K AttwoodDepartment of Computer Science, The University of Manchester, Manchester, United Kingdom.ORCID 0000-0003-2409-4235
Niall BeardDepartment of Computer Science, The University of Manchester, Manchester, United Kingdom.ORCID 0000-0002-2627-0231
Denise Carvalho-SilvaEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.ORCID 0000-0001-5662-1840
Alexandros C DimopoulosBiomedical Sciences Research Center "Alexander Fleming", Vari, Greece.ORCID 0000-0002-4602-2040
Victoria Dominguez Del AngelInstitut Français de Bioinformatique, Génoscope, France.
Michel DumontierInstitute of Data Science, Maastricht University, Maastricht, the Netherlands.ORCID 0000-0003-4727-9435
Kim T GurwitzUniversity of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-1992-5073
Roland KrauseUniversity of Luxembourg, Esch-sur-Alzette, Luxembourg.ORCID 0000-0001-9938-7126
Peter McQuiltonOxford e-Research Centre, Department of Engineering Sciences, University of Oxford, United Kingdom.
Loredana Le PeraIBIOM-CNR, Bari, Italy.ORCID 0000-0002-0076-9878
Sarah L MorganEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, United Kingdom.ORCID 0000-0001-9528-8323
Päivi RausteCSC-IT Center for Science, Keilaranta, Espoo, Finland.ORCID 0000-0001-8315-5259
Allegra ViaIBPM-CNR, Sapienza Università di Roma, Roma, Italy.
Pascal KahlemScientific Network Management S.L., Barcelona, Spain.
Gabriella RusticiUniversity of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-3085-1271
Celia W G van GelderDutch Techcentre for Life Sciences, Utrecht, the Netherlands.ORCID 0000-0002-0223-2329
Patricia M PalagiSIB Training group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0001-9062-6303

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Everything we do today is becoming more and more reliant on the use of computers. The field of biology is no exception; but most biologists receive little or no formal preparation for the increasingly computational aspects of their discipline. In consequence, informal training courses are often needed to plug the gaps; and the demand for such training is growing worldwide. To meet this demand, some training programs are being expanded, and new ones are being developed. Key to both scenarios is the creation of new course materials. Rather than starting from scratch, however, it's sometimes possible to repurpose materials that already exist. Yet finding suitable materials online can be difficult: They're often widely scattered across the internet or hidden in their home institutions, with no systematic way to find them. This is a common problem for all digital objects. The scientific community has attempted to address this issue by developing a set of rules (which have been called the Findable, Accessible, Interoperable and Reusable [FAIR] principles) to make such objects more findable and reusable. Here, we show how to apply these rules to help make training materials easier to find, (re)use, and adapt, for the benefit of all.

Indexed as

Guidelines as TopicBiologyComputational BiologyComputer-Assisted InstructionHumansInformation Storage and Retrieval

Identifiers

PMID32437350
PMCPMC7241697

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.