Evidence map›Paper›PMID 32435938›Full record

ArticleMarine biotechnology (New York, N.Y.)2020

Molecular Identification, Characterization, and Expression Analysis of a Metallothionein Gene from Septifer virgatus.

Akihiro Sakatoku, Masahito Ishikawa, Kanna Yamazaki, Tomoya Nakamachi, Hiroyuki Kamachi, Daisuke Tanaka, Shogo Nakamura

Abstract read
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In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Akihiro SakatokuGraduate School of Science and Engineering, Department of Environmental and Energy Science Faculty of Earth and Environmental Systems, University of Toyama, Toyama, 930-8555, Japan. sakatoku@sci.u-toyama.ac.jp.
Masahito IshikawaGraduate School of Science and Engineering, Department of Environmental and Energy Science Faculty of Earth and Environmental Systems, University of Toyama, Toyama, 930-8555, Japan.
Kanna YamazakiGraduate School of Science and Engineering, Department of Environmental and Energy Science Faculty of Earth and Environmental Systems, University of Toyama, Toyama, 930-8555, Japan.
Tomoya NakamachiGraduate School of Science and Engineering, Department of Environmental and Energy Science Faculty of Earth and Environmental Systems, University of Toyama, Toyama, 930-8555, Japan.
Hiroyuki KamachiGraduate School of Science and Engineering, Department of Environmental and Energy Science Faculty of Earth and Environmental Systems, University of Toyama, Toyama, 930-8555, Japan.
Daisuke TanakaGraduate School of Science and Engineering, Department of Environmental and Energy Science Faculty of Earth and Environmental Systems, University of Toyama, Toyama, 930-8555, Japan.
Shogo NakamuraGraduate School of Science and Engineering, Department of Environmental and Energy Science Faculty of Earth and Environmental Systems, University of Toyama, Toyama, 930-8555, Japan.
University of Toyama · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study provides a preliminary characterization of a metallothionein (MT) gene in Septifer virgatus and highlights its potential use in biomonitoring. The full-length SvMT cDNA and the complete sequence of the SvMT gene were identified using reverse transcriptase PCR coupled with the rapid amplification of cDNA ends and the primer walking method. The SvMT cDNA encodes a protein of 72 amino acids having nine classical Cys-X-Cys motifs. Moreover, the deduced amino acids contained the conserved motif (Cys-x-Cys-x(3)-Cys-Thr-Gly-x(3)-Cys-x-Cys-x(3)-Cys-x-Cys-Lys) of MT family 2. Its molecular mass and isoelectric point were estimated to be 7.01 kDa and 7.00, respectively. BLAST-based searching indicated that SvMT shared 81.0% amino acid sequence identity with Mytilus edulis MT-20-II. The SvMT gene has three coding exons and two introns. After exposure to 1 mg/L cadmium chloride, the expression of SvMT increased 15-fold by 3 days (d), with a maximum expression of 27-fold by 5 d compared with the pre-exposure level. After exposure to 2 mg/L zinc chloride, the expression of SvMT increased 2.5-fold by 3 d and 4.7-fold by 5 d compared with the pre-exposure level. A significant increase in the expression level of SvMT mRNA was observed after the exposure of S. virgatus to the combination of 0.003 mg/L cadmium chloride and 0.2 mg/L zinc chloride compared with the pre-exposure level. Our work indicates that the SvMT gene is associated with stress responses and could be a potential biomarker for marine pollution.

Indexed as

Amino Acid SequenceAnimalsCadmium ChlorideChloridesDNA, ComplementaryEnvironmental BiomarkersMetallothioneinMytilidaeWater Pollution, ChemicalZinc CompoundsCadmium ChlorideChloridesDNA, ComplementaryEnvironmental BiomarkersMetallothioneinzinc chlorideZinc CompoundsBiomarkerHeavy metalMetallothioneinSeptifer virgatus

Identifiers

PMID32435938
OpenAlexW3027277716

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.