Evidence map›Paper›PMID 32433965›Full record

ArticleCell reports2020

Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing.

Emily C Freund, Anne L Sapiro, Qin Li, Sandra Linder, James J Moresco, John R Yates, Jin Billy Li

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. ZYS-1 is not an ADAR1 inhibitor.RNA (New York, N.Y.) · 2025
    Article
  8. Review
  9. Article
  10. ADAR1: from basic mechanisms to inhibitors.Trends in cell biology · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Emily C FreundDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Anne L SapiroDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Qin LiDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Sandra LinderDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
James J MorescoDepartment of Molecular Medicine, 10550 North Torrey Pines Road, SR302, The Scripps Research Institute, La Jolla, CA 92037, USA.
John R YatesDepartment of Molecular Medicine, 10550 North Torrey Pines Road, SR302, The Scripps Research Institute, La Jolla, CA 92037, USA.
Jin Billy LiDepartment of Genetics, Stanford University, Stanford, CA 94305, USA. Electronic address: jin.billy.li@stanford.edu.
Stanford University · USScripps Research Institute · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI FIELDS, STANLEY · 1996 to 2011
$24.7M
GENETICS TRAINING PROGRAM FOR PHD CANDIDATEST32GM007790 · NIGMS · STANFORD UNIVERSITY · PI BRUNET, ANNE, KINGSLEY, DAVID M · 1985 to 2020
$12.8M
Profiling and Dissecting the Dynamic Regulation of RNA EditingR01GM102484 · NIGMS · STANFORD UNIVERSITY · PI LI, JIN BILLY · 2013 to 2021
$3.1M
Systematic characterization of trans regulation of A-to-I RNA editing in neuronsR01MH115080 · NIMH · STANFORD UNIVERSITY · PI LI, JIN BILLY · 2017 to 2021
$2.3M
Systematic approaches to deciphering cis regulation of A-to-I RNA editingR01GM124215 · NIGMS · STANFORD UNIVERSITY · PI LI, JIN BILLY · 2017 to 2020
$1.7M
NCRR NIH HHS P41 RR011823NIGMS NIH HHS R01 GM102484NIGMS NIH HHS R01 GM124215NIGMS NIH HHS T32 GM007790NIMH NIH HHS R01 MH115080
6 · The paper itself

Abstract

Adenosine-to-inosine RNA editing is catalyzed by adenosine deaminase acting on RNA (ADAR) enzymes that deaminate adenosine to inosine. Although many RNA editing sites are known, few trans regulators have been identified. We perform BioID followed by mass spectrometry to identify trans regulators of ADAR1 and ADAR2 in HeLa and M17 neuroblastoma cells. We identify known and novel ADAR-interacting proteins. Using ENCODE data, we validate and characterize a subset of the novel interactors as global or site-specific RNA editing regulators. Our set of novel trans regulators includes all four members of the DZF-domain-containing family of proteins: ILF3, ILF2, STRBP, and ZFR. We show that these proteins interact with each ADAR and modulate RNA editing levels. We find ILF3 is a broadly influential negative regulator of editing. This work demonstrates the broad roles that RNA binding proteins play in regulating editing levels, and establishes DZF-domain-containing proteins as a group of highly influential RNA editing regulators.

Indexed as

RNA EditingAdenosine DeaminaseCell Line, TumorHeLa CellsHumansMass SpectrometryNeuroblastomaRNA-Binding ProteinsADARB1 protein, humanADAR protein, humanAdenosine DeaminaseRNA-Binding ProteinsADARA-to-I RNA editingBioIDBirADZF-domainILF2ILF3STRBPZFR

Identifiers

PMID32433965
PMCPMC7306178
OpenAlexW3027045752

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.