Evidence map›Paper›PMID 32433824›Full record

ArticleFEBS open bio2020

Pig-specific RNA editing during early embryo development revealed by genome-wide comparisons.

Tongtong Li, Qun Li, Hao Li, Xia Xiao, Dawood Ahmad Warraich, Ning Zhang, Ziyun Chen, Junyao Hou, Tong Liu, Xiaogang Weng and 3 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in FEBS open bio, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Tongtong LiCollege of Life Sciences, Northwest A&F University, Yangling, China.
Qun LiCollege of Life Sciences, Northwest A&F University, Yangling, China.
Hao LiCollege of Life Sciences, Northwest A&F University, Yangling, China.
Xia XiaoCollege of Life Sciences, Northwest A&F University, Yangling, China.
Dawood Ahmad WarraichCollege of Life Sciences, Northwest A&F University, Yangling, China.
Ning ZhangCollege of Life Sciences, Northwest A&F University, Yangling, China.
Ziyun ChenCollege of Life Sciences, Northwest A&F University, Yangling, China.
Junyao HouCollege of Life Sciences, Northwest A&F University, Yangling, China.
Tong LiuChinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Center for Plant Stress Biology, Chinese Academy of Sciences, Beijing, China.
Xiaogang WengKey Laboratory of Animal Cellular and Genetic Engineering of Heilongjiang Province, College of Life Science, Northeast Agricultural University, Harbin, China.
Zhonghua LiuKey Laboratory of Animal Cellular and Genetic Engineering of Heilongjiang Province, College of Life Science, Northeast Agricultural University, Harbin, China.
Jinlian HuaCollege of Veterinary Medicine, Shaanxi Centre of Stem Cells Engineering & Technology, Northwest A&F University, Yangling, China.
Mingzhi LiaoCollege of Life Sciences, Northwest A&F University, Yangling, China.ORCID 0000-0002-5216-5742
Northwest A&F University · CNNortheast Agricultural University · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Posttranscriptional modification of mRNA sequences through RNA editing can increase transcriptome and proteome diversity in eukaryotes. Studies of fetal and adult tissues showed that adenosine-to-inosine RNA editing plays a crucial role in early human development, but there is a lack of global understanding of dynamic RNA editing during mammalian early embryonic development. Therefore, here we used RNA sequencing data from human, pig and mouse during early embryonic development to detect edited genes that may regulate stem cell pluripotency. We observed that although most of the RNA editing sites are located in intergenic, intron and UTR, a few editing sites are in coding regions and may result in nonsynonymous amino acid changes. Some editing sites are predicted to change the structure of a protein. We also report that HNF1A, TBX3, ACLY, ECI1 and ERDR1 are related to embryonic development and cell division.

Indexed as

RNA EditingAnimalsChromosomesEmbryonic DevelopmentHumansMiceRNA, MessengerRNA-SeqSwineRNA, Messengerearly embryo developmentECI1HNF1AHOX familypigRNA editing

Identifiers

PMID32433824
PMCPMC7327910
OpenAlexW3026110800

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.