Evidence map›Paper›PMID 32431828›Full record

ArticleIUCrJ2020

High-resolution cryo-EM reconstructions in the presence of substantial aberrations.

Raquel Bromberg, Yirui Guo, Dominika Borek, Zbyszek Otwinowski

Open access · greenAbstract read
In one paragraph

Article in IUCrJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Structural aspects of enzymes involved in prokaryotic Gram-positive heme biosynthesis.Computational and structural biotechnology journal · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Leginon: New features and applications.Protein science : a publication of the Protein Society · 2021
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Raquel BrombergDepartment of Biophysics, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yirui GuoDepartment of Biophysics, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Dominika BorekDepartment of Biophysics, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Zbyszek OtwinowskiDepartment of Biophysics, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
The University of Texas Southwestern Medical Center · USInVivo Analytics (United States) · US

Funding

X-ray data analysis in the presence of structural variability - Administrative SupplementR01GM117080 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 2015 to 2018
$1.4M
Accurate measurements of phasing signal to determine macromolecular structuresR01GM118619 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI OTWINOWSKI, ZBYSZEK · 2017 to 2020
$1.3M
Radioprotectants for structural biologyR21GM126406 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI BOREK, DOMINIKA MARTA · 2018 to 2019
$446k
NIAID NIH HHS HHSN272201700060CNIGMS NIH HHS R01 GM117080NIGMS NIH HHS R01 GM118619NIGMS NIH HHS R21 GM126406
6 · The paper itself

Abstract

Here, an analysis is performed of how uncorrected antisymmetric aberrations, such as coma and trefoil, affect cryo-EM single-particle reconstruction (SPR) results, and an analytical formula quantifying information loss owing to their presence is inferred that explains why Fourier-shell coefficient-based statistics may report significantly overestimated resolution if these aberrations are not fully corrected. The analysis is validated with reference-based aberration refinement for two cryo-EM SPR data sets acquired with a 200 kV microscope in the presence of coma exceeding 40 µm, and 2.3 and 2.7 Å reconstructions for 144 and 173 kDa particles, respectively, were obtained. The results provide a description of an efficient approach for assessing information loss in cryo-EM SPR data acquired in the presence of higher order aberrations, and address inconsistent guidelines regarding the level of aberrations that is acceptable in cryo-EM SPR experiments.

Indexed as

3D reconstruction and image processingautomationaxial aberrationscomacryo-EMimagingresolutionsingle-particle cryo-EMstructure determinationtrefoilvalidation

Identifiers

PMID32431828
PMCPMC7201289
OpenAlexW2979584344

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.