Evidence map›Paper›PMID 32430306›Full record

ArticleG3 (Bethesda, Md.)2020

Origin Specific Genomic Selection: A Simple Process To Optimize the Favorable Contribution of Parents to Progeny.

Chin Jian Yang, Rajiv Sharma, Gregor Gorjanc, Sarah Hearne, Wayne Powell, Ian Mackay

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Harnessing primary, secondary and tertiary genepools for durable wheat disease resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Analysis of historical selection in winter wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  7. Genomic prediction using training population design in interspecific soybean populations.Molecular breeding : new strategies in plant improvement · 2021
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Chin Jian YangScotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, UK.ORCID 0000-0002-4953-5589
Rajiv SharmaScotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, UK.ORCID 0000-0003-3488-8688
Gregor GorjancThe Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh, EH25 9RG, UK.ORCID 0000-0001-8008-2787
Sarah HearneCIMMYT, KM 45 Carretera Mexico-Veracruz, El Batan, 56237, Texcoco, Edo. De Mexico, Mexico, and.ORCID 0000-0003-2015-2450
Wayne PowellScotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, UK.ORCID 0000-0002-5612-3398
Ian MackayScotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, UK, i.j.mackay@gmail.com.ORCID 0000-0002-1109-4730
Scotland's Rural College · GBCentro Internacional de Mejoramiento de Maíz Y Trigo · MXRoslin Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/P018653/1Biotechnology and Biological Sciences Research Council BBS/E/D/30002275
6 · The paper itself

Abstract

Modern crop breeding is in constant demand for new genetic diversity as part of the arms race with genetic gain. The elite gene pool has limited genetic variation and breeders are trying to introduce novelty from unadapted germplasm, landraces and wild relatives. For polygenic traits, currently available approaches to introgression are not ideal, as there is a demonstrable bias against exotic alleles during selection. Here, we propose a partitioned form of genomic selection, called Origin Specific Genomic Selection (OSGS), where we identify and target selection on favorable exotic alleles. Briefly, within a population derived from a bi-parental cross, we isolate alleles originating from the elite and exotic parents, which then allows us to separate out the predicted marker effects based on the allele origins. We validated the usefulness of OSGS using two nested association mapping (NAM) datasets: barley NAM (elite-exotic) and maize NAM (elite-elite), as well as by computer simulation. Our results suggest that OSGS works well in its goal to increase the contribution of favorable exotic alleles in bi-parental crosses, and it is possible to extend the approach to broader multi-parental populations.

Indexed as

Plant BreedingQuantitative Trait LociAllelesChromosome MappingComputer SimulationGenetic VariationGenomicsPhenotypebarleyGenomic Predictiongenomic selectionGenPredintrogressionmaizeNAMplant breedingShared Data Resources

Identifiers

PMID32430306
PMCPMC7341124
OpenAlexW3026863651

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.