Evidence map›Paper›PMID 32429912›Full record

ArticleMicrobial cell factories2020

Key factors affecting ammonium production by an Azotobacter vinelandii strain deregulated for biological nitrogen fixation.

Mary H Plunkett, Carolann M Knutson, Brett M Barney

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 53 citations in OpenAlex.

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  4. Microbiology (Reading, England) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mary H PlunkettBiotechnology Institute, University of Minnesota, St. Paul, MN, 55108, USA.
Carolann M KnutsonBiotechnology Institute, University of Minnesota, St. Paul, MN, 55108, USA.
Brett M BarneyDepartment of Bioproducts and Biosystems Engineering, University of Minnesota, 1390 Eckles Avenue, St. Paul, MN, 55108-6130, USA. bbarney@umn.edu.ORCID http://orcid.org/0000-0002-5976-5492
University of Minnesota · US

Funding

MnDRIVE MnDrive 12National Institute of Food and Agriculture 2020-67019-31148National Science Foundation CBET-1437758NIFA MIN-12-081
6 · The paper itself

Abstract

backgroundThe obligate aerobe Azotobacter vinelandii is a model organism for the study of biological nitrogen fixation (BNF). This bacterium regulates the process of BNF through the two component NifL and NifA system, where NifA acts as an activator, while NifL acts as an anti-activator based on various metabolic signals within the cell. Disruption of the nifL component in the nifLA operon in a precise manner results in a deregulated phenotype that produces levels of ammonium that far surpass the requirements within the cell, and results in the release of up to 30 mM of ammonium into the growth medium. While many studies have probed the factors affecting growth of A. vinelandii, the features important to maximizing this high-ammonium-releasing phenotype have not been fully investigated.

resultsIn this work, we report the effect of temperature, medium composition, and oxygen requirements on sustaining and maximizing elevated levels of ammonium production from a nitrogenase deregulated strain. We further investigated several pathways, including ammonium uptake through the transporter AmtB, which could limit yields through energy loss or futile recycling steps. Following optimization, we compared sugar consumption and ammonium production, to attain correlations and energy requirements to drive this process in vivo. Ammonium yields indicate that between 5 and 8% of cellular protein is fully active nitrogenase MoFe protein (NifDK) under these conditions.

conclusionsThese findings provide important process optimization parameters, and illustrate that further improvements to this phenotype can be accomplished by eliminating futile cycles.

Indexed as

Gene Expression Regulation, BacterialAmmonium CompoundsAzotobacter vinelandiiCulture MediaGenes, BacterialNitrogenaseNitrogen FixationOxygenTemperatureTranscription FactorsAmmonium CompoundsCulture MediaNitrogenaseOxygenTranscription FactorsAmmoniumAzotobacter vinelandiinifLANitrogen fixationOptimization

Identifiers

PMID32429912
PMCPMC7238568
OpenAlexW3026037660

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.