Evidence map›Paper›PMID 32428845›Full record

ArticleRedox biology2020

A dual attack on the peroxide bond. The common principle of peroxidatic cysteine or selenocysteine residues.

M Dalla Tiezza, F M Bickelhaupt, L Flohé, M Maiorino, F Ursini, L Orian

Open access · goldAbstract read
In one paragraph

Article in Redox biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Biological and Catalytic Properties of Selenoproteins.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Diphenyl Diselenide and SARS-CoV-2:Journal of chemical information and modeling · 2023
    Article
  6. Article
  7. Article
  8. Superoxide Radicals in the Execution of Cell Death.Antioxidants (Basel, Switzerland) · 2022
    Review
  9. Review
  10. A comparison of Prx- and OxyR-based HThe Journal of biological chemistry · 2021
    Article
  11. Article
  12. Looking Back at the Early Stages of Redox Biology.Antioxidants (Basel, Switzerland) · 2020
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

M Dalla TiezzaDipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131, Padova, Italy.
F M BickelhauptDepartment of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, the Netherlands; Institute for Molecules and Materials (IMM), Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, the Netherlands.
L FlohéDipartimento di Medicina Molecolare, Università degli Studi di Padova, V.le G. Colombo 3, 35121, Padova, Italy; Departamento de Bioquímica, Universidad de la República, Avda. General Flores 2125, 11800, Montevideo, Uruguay.
M MaiorinoDipartimento di Medicina Molecolare, Università degli Studi di Padova, V.le G. Colombo 3, 35121, Padova, Italy.
F UrsiniDipartimento di Medicina Molecolare, Università degli Studi di Padova, V.le G. Colombo 3, 35121, Padova, Italy.
L OrianDipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, 35131, Padova, Italy. Electronic address: laura.orian@unipd.it.
University of Padua · ITRadboud University Nijmegen · NLUniversidad de la República · UY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The (seleno)cysteine residues in some protein families react with hydroperoxides with rate constants far beyond those of fully dissociated low molecular weight thiol or selenol compounds. In case of the glutathione peroxidases, we could demonstrate that high rate constants are achieved by a proton transfer from the chalcogenol to a residue of the active site [Orian et al. Free Radic. Biol. Med. 87 (2015)]. We extended this study to three more protein families (OxyR, GAPDH and Prx). According to DFT calculations, a proton transfer from the active site chalcogenol to a residue within the active site is a prerequisite for both, creating a chalcogenolate that attacks one oxygen of the hydroperoxide substrate and combining the delocalized proton with the remaining OH or OR, respectively, to create an ideal leaving group. The "parking postions" of the delocalized proton differ between the protein families. It is the ring nitrogen of tryptophan in GPx, a histidine in GAPDH and OxyR and a threonine in Prx. The basic principle, however, is common to all four families of proteins. We, thus, conclude that the principle outlined in this investigation offers a convincing explanation for how a cysteine residue can become peroxidatic.

Indexed as

CysteineSelenocysteineCatalytic DomainGlutathione PeroxidaseHydrogen PeroxidePeroxidesPeroxiredoxinsCysteineGlutathione PeroxidaseHydrogen PeroxidePeroxidesPeroxiredoxinsSelenocysteineDensity functional theoryDFTGAPDHGlyceroaldehyde dehydrogenaseOxidative stress regulatorOxyRPeroxidatic cysteinePeroxiredoxinReaction mechanism

Identifiers

PMID32428845
PMCPMC7231847
OpenAlexW3016385818

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.