Evidence map›Paper›PMID 32428017›Full record

ArticlePloS one2020

The aroma of TEMED as an activation and stabilizing signal for the antibacterial enzyme HEWL.

Zahra Seraj, Shahin Ahmadian, Matthew R Groves, Arefeh Seyedarabi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Zahra SerajDepartment of Biochemistry, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.
Shahin AhmadianDepartment of Biochemistry, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.
Matthew R GrovesDepartment of Drug Design, University of Groningen, Groningen, The Netherlands.
Arefeh SeyedarabiDepartment of Biochemistry, Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran.ORCID 0000-0003-4234-9799
University of Groningen · NLUniversity of Tehran · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The unpleasant smell released from dead bodies, may serve as an alarm for avoiding certain behaviour or as feeding or oviposition attractants for animals. However, little is known about their effect on the structure and function of proteins. Previously, we reported that using the aroma form of TEMED (a diamine), representative of the "smell of death", could completely inhibit the fibril formation of HEWL, as an antibacterial enzyme, and a model protein for fibrillation studies. To take this further, in this study we investigated the kinetics of TEMED using a number of techniques and in particular X-ray crystallography to identify the binding site(s) of TEMED and search for hotspot(s) necessary to inhibit fibril formation of HEWL. Structural data, coupled with other experimental data reported in this study, revealed that TEMED completely inhibited fibril formation and stabilized the structure of HEWL through enhancement of the CH-Π interaction and binding to an inhibitor hotspot comprised of residues Lys33, Phe34, Glu35 and Asn37 of HEWL. Additionally, results from this study showed that the binding of TEMED increased the activity and thermal stability of HEWL, helping to improve the function of this antibacterial enzyme. In conclusion, the role of the "smell of death", as an important signal molecule affecting the activity and stability of HEWL was greatly highlighted, suggesting that aroma producing small molecules can be signals for structural and functional changes in proteins.

Indexed as

AmyloidAnimalsAnti-Bacterial AgentsBinding SitesChickensCrystallography, X-RayEthylenediaminesFemaleHydrogen-Ion ConcentrationKineticsModels, MolecularMuramidaseOdorantsAmyloidAnti-Bacterial AgentsEthylenediamineshen egg lysozymeMuramidaseN,N,N',N'-tetramethylethylenediamine

Identifiers

PMID32428017
PMCPMC7236982
OpenAlexW3028150125

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.