Evidence map›Paper›PMID 32427943›Full record

ArticleScientific reports2020

The molecular dynamics of bacterial spore and the role of calcium dipicolinate in core properties at the sub-nanosecond time-scale.

Alexandre Colas de la Noue, Francesca Natali, Fatima Fekraoui, Patrick Gervais, Nicolas Martinez, Jean-Marie Perrier-Cornet, Judith Peters

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Alexandre Colas de la NoueAgroSup Dijon, Université de Bourgogne-Franche-Comté, UMR 02.102 PAM, 1 esplanade Erasme, 21000, Dijon, France.
Francesca NataliCNR-IOM, OGG, 71 avenue des Martyrs, CS 20156, 38042, Grenoble, Cedex 9, France.
Fatima FekraouiAgroSup Dijon, Université de Bourgogne-Franche-Comté, UMR 02.102 PAM, 1 esplanade Erasme, 21000, Dijon, France.
Patrick GervaisAgroSup Dijon, Université de Bourgogne-Franche-Comté, UMR 02.102 PAM, 1 esplanade Erasme, 21000, Dijon, France.ORCID http://orcid.org/0000-0002-4863-7671
Nicolas MartinezInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble, Cedex 9, France.ORCID http://orcid.org/0000-0002-3973-3864
Jean-Marie Perrier-CornetAgroSup Dijon, Université de Bourgogne-Franche-Comté, UMR 02.102 PAM, 1 esplanade Erasme, 21000, Dijon, France.ORCID http://orcid.org/0000-0002-6547-5731
Judith PetersInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble, Cedex 9, France. jpeters@ill.fr.ORCID http://orcid.org/0000-0001-5151-7710
Université de Bourgogne · FRCentre National de la Recherche Scientifique · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRInstitut Laue-Langevin · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial spores are among the most resistant forms of life on Earth. Their exceptional resistance properties rely on various strategies, among them the core singular structure, organization and hydration. By using elastic incoherent neutron scattering, we probed the dynamics of Bacillus subtilis spores to determine whether core macromolecular motions at the sub-nanosecond timescale could also contribute to their resistance to physical stresses. In addition, in order to better specify the role of the various spore components, we used different mutants lacking essential structure such as the coat (PS4150 mutant), or the calcium dipicolinic acid complex (CaDPA) located in the core (FB122 mutant). PS4150 allows to better probe the core's dynamics, as proteins of the coat represent an important part of spore proteins, and FB122 gives information about the role of the large CaDPA depot for the mobility of core's components. We show that core's macromolecular mobility is not particularly constrained at the sub-nanosecond timescale in spite of its low water content as some dynamical characteristics as force constants are very close to those of vegetative bacteria such as Escherichia coli or to those of fully hydrated proteins. Although the force constants of the coatless mutant are similar to the wild-type's ones, it has lower mean square displacements (MSDs) at high Q showing that core macromolecules are somewhat more constrained than the rest of spore components. However, no behavior reflecting the glassy state regularly evoked in the literature could be drawn from our data. As hydration and macromolecules' mobility are highly correlated, the previous assumption, that core low water content might explain spores' exceptional resistance properties seems unlikely. Thus, we confirm recent theories, suggesting that core water is mostly as free as bulk water and proteins/macromolecules are fully hydrated. The germination of spores leads to a much less stable system with a force constant of 0.1 N/m and MSDs ~2.5 times higher at low Q than in the dormant state. DPA has also an influence on core mobility with a slightly lower force constant for the DPA-less mutant than for the wild-type, and MSDs that are ~ 1.8 times higher on average than for the wild-type at low Q. At high Q, germinated and DPA-less spores were very similar to the wild-type ones, showing that DPA and core compact structure might influence large amplitude motions rather than local dynamics of macromolecules.

Indexed as

Bacillus subtilisBacterial ProteinsEscherichia coliKineticsMutationPicolinic AcidsSpores, BacterialBacterial Proteinspicolinic acidPicolinic Acids

Identifiers

PMID32427943
PMCPMC7237433
OpenAlexW3027114476

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.