Evidence map›Paper›PMID 32425114›Full record

ArticleCell transplantation

RNA Sequencing of Human Peripheral Nerve in Response to Injury: Distinctive Analysis of the Nerve Repair Pathways.

Andrew S Welleford, Jorge E Quintero, Nader El Seblani, Eric Blalock, Sumedha Gunewardena, Steven M Shapiro, Sean M Riordan, Peter Huettl, Zain Guduru, John A Stanford and 2 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Cell transplantation. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02369003 (Continuation of a Pilot Study to Evaluate the Safety and Feasibility of Implanting Autologous Peripheral Nerve Grafts in Subjects With Parkinson's Disease Undergoing Deep Brain Stimulation Surgery and Treatment), which is not on this map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02369003 phase1active not recruitingnot on this map

Continuation of a Pilot Study to Evaluate the Safety and Feasibility of Implanting Autologous Peripheral Nerve Grafts in Subjects With Parkinson's Disease Undergoing Deep Brain Stimulation Surgery and Treatment

TypeinterventionalSponsorCraig van Horne, MD, PhDRan2015 to 2027Enrolled70ConditionsParkinson's DiseaseArmsAutologous Peripheral Nerve Graft
3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Andrew S WellefordDepartment of Neuroscience, University of Kentucky Medical Center, Lexington, KY, USA.
Jorge E QuinteroDepartment of Neuroscience, University of Kentucky Medical Center, Lexington, KY, USA.
Nader El SeblaniDepartment of Neuroscience, University of Kentucky Medical Center, Lexington, KY, USA.ORCID 0000-0002-4042-4890
Eric BlalockDepartment of Neuroscience, University of Kentucky Medical Center, Lexington, KY, USA.
Sumedha GunewardenaKansas Intellectual and Developmental Disabilities Research Center, University of Kansas Medical Center, KS, USA.
Steven M ShapiroDivision of Neurology, Department of Pediatrics, Children's Mercy Hospital, Kansas City, MO, USA.
Sean M RiordanDivision of Neurology, Department of Pediatrics, Children's Mercy Hospital, Kansas City, MO, USA.
Peter HuettlDepartment of Neuroscience, University of Kentucky Medical Center, Lexington, KY, USA.
Zain GuduruDepartment of Neurology, University of Kentucky Medical Center, Lexington, KY, USA.
John A StanfordDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, KS, USA.
Craig G van HorneDepartment of Neuroscience, University of Kentucky Medical Center, Lexington, KY, USA.
Greg A GerhardtDepartment of Neuroscience, University of Kentucky Medical Center, Lexington, KY, USA.
University of Kentucky · USChildren's Mercy Hospital · USUniversity of Kansas Medical Center · US

Funding

RADx-UP: Improving the Response of Local Urban and Rural Communities to Disparities in Covid-19 TestingUL1TR002366 · NCATS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Mario Castro, JAMES STEVEN LEEDER · 2017 to 2026
$44.3M
Using PCORnet to Expand the DS-CONNECT Cohort Through Healthcare System Recruitment, Incorporating Electronic Health Records, and Assessing Self-DeterminationU54HD090216 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI COLOMBO, JOHN A. · 2016 to 2020
$6.2M
Molecular Regulation of Cell Development and Differentiation Phase III COBREP30GM122731 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ABRAHAMSON, DALE R · 2017 to 2021
$5.6M
High Throughput Sequencing System for KUMC Genomics CoreS10OD021743 · OD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SMITH, PETER G · 2017 to 2017
$493k
NCATS NIH HHS UL1 TR002366NICHD NIH HHS U54 HD090216NIGMS NIH HHS P30 GM122731NIH HHS S10 OD021743
6 · The paper itself

Abstract

The development of regenerative therapies for central nervous system diseases can likely benefit from an understanding of the peripheral nervous system repair process, particularly in identifying potential gene pathways involved in human nerve repair. This study employed RNA sequencing (RNA-seq) technology to analyze the whole transcriptome profile of the human peripheral nerve in response to an injury. The distal sural nerve was exposed, completely transected, and a 1 to 2 cm section of nerve fascicles was collected for RNA-seq from six participants with Parkinson's disease, ranging in age between 53 and 70 yr. Two weeks after the initial injury, another section of the nerve fascicles of the distal and pre-degenerated stump of the nerve was dissected and processed for RNA-seq studies. An initial analysis between the pre-lesion status and the postinjury gene expression revealed 3,641 genes that were significantly differentially expressed. In addition, the results support a clear transdifferentiation process that occurred by the end of the 2-wk postinjury. Gene ontology (GO) and hierarchical clustering were used to identify the major signaling pathways affected by the injury. In contrast to previous nonclinical studies, important changes were observed in molecular pathways related to antiapoptotic signaling, neurotrophic factor processes, cell motility, and immune cell chemotactic signaling. The results of our current study provide new insights regarding the essential interactions of different molecular pathways that drive neuronal repair and axonal regeneration in humans.

Indexed as

AgedHumansMiddle AgedNerve RegenerationPeripheral Nerve InjuriesSequence Analysis, RNAgraftneurodegenerative diseasesperipheral nerveRNA-seqSchwann cellWallerian degeneration

Identifiers

PMID32425114
PMCPMC7563818
OpenAlexW3027180617

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.