Evidence map›Paper›PMID 32424303›Full record

ArticleNature chemical biology2020

Multiplexed GTPase and GEF biosensor imaging enables network connectivity analysis.

Daniel J Marston, Marco Vilela, Jaewon Huh, Jinqi Ren, Mihai L Azoitei, George Glekas, Gaudenz Danuser, John Sondek, Klaus M Hahn

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Allosteric Biosensors Unravel GTPase-Effector Feedback.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Daniel J Marston *Department of Pharmacology, UNC Chapel Hill, Chapel Hill, NC, USA.
Marco Vilela *Departments of Bioinformatics and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jaewon HuhDepartments of Bioinformatics and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jinqi RenDepartment of Pharmacology, UNC Chapel Hill, Chapel Hill, NC, USA.
Mihai L AzoiteiDepartment of Pharmacology, UNC Chapel Hill, Chapel Hill, NC, USA.
George GlekasDepartment of Pharmacology, UNC Chapel Hill, Chapel Hill, NC, USA.
Gaudenz DanuserDepartments of Bioinformatics and Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Gaudenz.Danuser@UTSouthwestern.edu.ORCID http://orcid.org/0000-0001-8583-2014
John SondekDepartment of Pharmacology, UNC Chapel Hill, Chapel Hill, NC, USA. sondek@med.unc.edu.ORCID http://orcid.org/0000-0002-1127-8310
Klaus M HahnDepartment of Pharmacology, UNC Chapel Hill, Chapel Hill, NC, USA. khahn@med.unc.edu.ORCID http://orcid.org/0000-0002-1970-7562
University of North Carolina at Chapel Hill · USThe University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
Dissecting signaling in vivo via precise control and visualization of protein activityR35GM122596 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Klaus M. Hahn · 2017 to 2026
$7.4M
Functional causality in regulating cell morphogenesisR35GM136428 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI DANUSER, GAUDENZ · 2020 to 2024
$4.1M
The Mechanics of Actin-mediated Cell ProtrusionR01GM071868 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI DANUSER, GAUDENZ · 2007 to 2020
$2.9M
Tiam1, a prototypical Rho-family GEFR01GM062299 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SONDEK, JOHN E · 2001 to 2011
$2.3M
NCI NIH HHS T32 CA009156NIGMS NIH HHS R01 GM062299NIGMS NIH HHS R01 GM071868NIGMS NIH HHS R35 GM122596NIGMS NIH HHS R35 GM136428
6 · The paper itself

Abstract

Here we generate fluorescence resonance energy transfer biosensors for guanine exchange factors (GEFs) by inserting a fluorescent protein pair in a structural 'hinge' common to many GEFs. Fluorescent biosensors can map the activation of signaling molecules in space and time, but it has not been possible to quantify how different activation events affect one another or contribute to a specific cell behavior. By imaging the GEF biosensors in the same cells as red-shifted biosensors of Rho GTPases, we can apply partial correlation analysis to parse out the extent to which each GEF contributes to the activation of a specific GTPase in regulating cell movement. Through analysis of spontaneous cell protrusion events, we identify when and where the GEF Asef regulates the GTPases Cdc42 and Rac1 to control cell edge dynamics. This approach exemplifies a powerful means to elucidate the real-time connectivity of signal transduction networks.

Indexed as

Amino Acid SequenceBiosensing Techniquescdc42 GTP-Binding ProteinFluorescence Resonance Energy TransferGuanine Nucleotide Exchange FactorsProtein Bindingrac1 GTP-Binding Proteinrho GTP-Binding ProteinsSequence Homology, Amino AcidSignal Transductioncdc42 GTP-Binding ProteinGuanine Nucleotide Exchange Factorsrac1 GTP-Binding Proteinrho GTP-Binding Proteins

Identifiers

PMID32424303
PMCPMC7388658
OpenAlexW3024188829

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.