Evidence map›Paper›PMID 32424123›Full record

ArticleScientific reports2020

Detecting qualitative changes in biological systems.

Cristina Mitrea, Aliccia Bollig-Fischer, Călin Voichiţa, Michele Donato, Roberto Romero, Sorin Drăghici

Abstract readValidation Study
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cristina MitreaWayne State University, Department of Computer Science, Detroit, 48202, USA.
Aliccia Bollig-FischerWayne State University, Department of Oncology, Detroit, 48201, USA.
Călin VoichiţaWayne State University, Department of Computer Science, Detroit, 48202, USA.
Michele DonatoStanford University, Institute for Immunity, Transplantation and Infection, Stanford, 94305, USA.
Roberto RomeroEunice Kennedy Shriver National Institute of Child Health and Human Development, NICHD/NIH/DHHS, Perinatology Research Branch, Division of Obstetrics and Maternal-Fetal Medicine, Division of Intramural Research, Detroit, 48201, USA.ORCID http://orcid.org/0000-0002-4448-5121
Sorin DrăghiciWayne State University, Department of Computer Science, Detroit, 48202, USA. sorin@wayne.edu.ORCID http://orcid.org/0000-0002-0786-8377

Funding

Pathway-Guide: A novel tool for the analysis of signaling and metabolic pathwaysR42GM087013 · NIGMS · ADVAITA CORPORATION · PI DRAGHICI, SORIN · 2011 to 2013
$2.2M
Novel methods for the analysis of gene signaling pathways with applications in obR01DK089167 · NIDDK · WAYNE STATE UNIVERSITY · PI DRAGHICI, SORIN · 2010 to 2013
$1.2M
NICHD NIH HHS HHSN275201300006CNIDDK NIH HHS R01 DK089167NIGMS NIH HHS R42 GM087013
6 · The paper itself

Abstract

Currently, most diseases are diagnosed only after significant disease-associated transformations have taken place. Here, we propose an approach able to identify when systemic qualitative changes in biological systems happen, thus opening the possibility for therapeutic interventions before the occurrence of symptoms. The proposed method exploits knowledge from biological networks and longitudinal data using a system impact analysis. The method is validated on eight biological phenomena, three synthetic datasets and five real datasets, for seven organisms. Most importantly, the method accurately detected the transition from the control stage (benign) to the early stage of hepatocellular carcinoma on an eight-stage disease dataset.

Indexed as

AnimalsBacteriaBiomarkersCaenorhabditis elegansCarcinoma, HepatocellularComputational BiologyHumansLiver NeoplasmsSystems BiologyYeastsBiomarkers

Identifiers

PMID32424123
PMCPMC7235093

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.