ArticleGenome biology2020
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks.
Article in Genome biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
6 citing papers in PubMed.
- Standards, dissemination, and best practices in systems biology.Current opinion in biotechnology · 2023Review
- Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.Bioinformatics advances · 2023Article
- Isolating structural errors in reaction networks in systems biology.Bioinformatics (Oxford, England) · 2021Article
- Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior.Nucleic acids research · 2021Article
- Best Practices for Making Reproducible Biochemical Models.Cell systems · 2020Review
- BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks.Genome biology · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
Abstract
Non-canonical residues, caps, crosslinks, and nicks are important to many functions of DNAs, RNAs, proteins, and complexes. However, we do not fully understand how networks of such non-canonical macromolecules generate behavior. One barrier is our limited formats for describing macromolecules. To overcome this barrier, we develop BpForms and BcForms, a toolkit for representing the primary structure of macromolecules as combinations of residues, caps, crosslinks, and nicks. The toolkit can help omics researchers perform quality control and exchange information about macromolecules, help systems biologists assemble global models of cells that encompass processes such as post-translational modification, and help bioengineers design cells.
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Registered trials
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