Evidence map›Paper›PMID 32423375›Full record

ArticleBMC microbiology2020

Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site.

Christen L Grettenberger, Jeff R Havig, Trinity L Hamilton

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Christen L GrettenbergerDepartment of Earth and Planetary Sciences, University of California, Davis, CA, 95616, USA.
Jeff R HavigDepartment of Earth and Environmental Sciences, University of Minnesota, Minneapolis, MN, 55455, USA.
Trinity L HamiltonDepartment of Plant and Microbial Biology, University of Minnesota, 218 Cargill Building, St. Paul, MN, 55108, USA. trinityh@umn.edu.
University of Minnesota · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFerrovum spp. are abundant in acid mine drainage sites globally where they play an important role in biogeochemical cycling. All known taxa in this genus are Fe(II) oxidizers. Thus, co-occurring members of the genus could be competitors within the same environment. However, we found multiple, co-occurring Ferrovum spp. in Cabin Branch, an acid mine drainage site in the Daniel Boone National Forest, KY.

resultsHere we describe the distribution of Ferrovum spp. within the Cabin Branch communities and metagenome assembled genomes (MAGs) of two new Ferrovum spp. In contrast to previous studies, we recovered multiple 16S rRNA gene sequence variants suggesting the commonly used 97% cutoff may not be appropriate to differentiate Ferrovum spp. We also retrieved two nearly-complete Ferrovum spp. genomes from metagenomic data. The genomes of these taxa differ in several key ways relating to nutrient cycling, motility, and chemotaxis.

conclusionsPreviously reported Ferrovum genomes are also diverse with respect to these categories suggesting that the genus Ferrovum contains substantial metabolic diversity. This diversity likely explains how the members of this genus successfully co-occur in Cabin Branch and why Ferrovum spp. are abundant across geochemical gradients.

Indexed as

AcidsBetaproteobacteriaCarbon CycleDatabases, GeneticDNA, BacterialDNA, RibosomalFerric CompoundsKentuckyMetagenomicsMiningPhylogenyRNA, Ribosomal, 16SAcidsDNA, BacterialDNA, RibosomalFerric Compoundsferric oxideRNA, Ribosomal, 16SAcidophlicBiofilmCarbon fixationCo-occurrenceDenoised sequence variantsFerrovumIron oxidationMetagenomeMicrocosmNitrogen

Identifiers

PMID32423375
PMCPMC7236192
OpenAlexW3027123195

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.