Evidence map›Paper›PMID 32423003›Full record

ArticleGenes2020

Haplotype-Based Genome-Wide Association Study and Identification of Candidate Genes Associated with Carcass Traits in Hanwoo Cattle.

Swati Srivastava, Krishnamoorthy Srikanth, Sohyoung Won, Ju-Hwan Son, Jong-Eun Park, Woncheoul Park, Han-Ha Chai, Dajeong Lim

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Swati SrivastavaNational Institute of Animal Science, Rural Development Administration, Wanju-gun 55365, Korea.ORCID 0000-0003-0422-4151
Krishnamoorthy SrikanthNational Institute of Animal Science, Rural Development Administration, Wanju-gun 55365, Korea.ORCID 0000-0002-5205-193X
Sohyoung WonDepartment of Agricultural Biotechnology and Research Institute of Population Genomics, Seoul National University, Seoul 151742, Korea.
Ju-Hwan SonNational Institute of Animal Science, Rural Development Administration, Wanju-gun 55365, Korea.
Jong-Eun ParkNational Institute of Animal Science, Rural Development Administration, Wanju-gun 55365, Korea.ORCID 0000-0003-0718-3463
Woncheoul ParkNational Institute of Animal Science, Rural Development Administration, Wanju-gun 55365, Korea.
Han-Ha ChaiNational Institute of Animal Science, Rural Development Administration, Wanju-gun 55365, Korea.
Dajeong LimNational Institute of Animal Science, Rural Development Administration, Wanju-gun 55365, Korea.ORCID 0000-0003-3966-9150
Rural Development Administration · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hanwoo, is the most popular native beef cattle in South Korea. Due to its extensive popularity, research is ongoing to enhance its carcass quality and marbling traits. In this study we conducted a haplotype-based genome-wide association study (GWAS) by constructing haplotype blocks by three methods: number of single nucleotide polymorphisms (SNPs) in a haplotype block (nsnp), length of genomic region in kb (Len) and linkage disequilibrium (LD). Significant haplotype blocks and genes associated with them were identified for carcass traits such as BFT (back fat thickness), EMA (eye Muscle area), CWT (carcass weight) and MS (marbling score). Gene-set enrichment analysis and functional annotation of genes in the significantly-associated loci revealed candidate genes, including

Indexed as

Genome-Wide Association StudyAdiposityAnimalsBody WeightCadaverCattleGene OntologyHaplotypesLipaseMeatOculomotor MusclesPhospholipase C betaPolymorphism, Single NucleotideSoftwareLipasePhospholipase C betacarcass traitsCELhaplotypePLCB1PLCB4

Identifiers

PMID32423003
PMCPMC7290854
OpenAlexW3025490927

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.