Evidence map›Paper›PMID 32422120›Full record

ArticleThe Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases

Viral metagenomics performed in patients with acute febrile syndrome during Toxoplasma gondii outbreak in south Brazil.

Rafael Dos Santos Bezerra, Cristiane Fração Diefenbach, Dalnei Veiga Pereira, Simone Kashima, Svetoslav Nanev Slavov

Open access · goldAbstract read
In one paragraph

Article in The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Application of metagenomic next-generation sequencing in cutaneous tuberculosis.Frontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rafael Dos Santos BezerraUniversidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Ciências Biológicas e da Saúde, Riberão Preto,SP, Brazil; Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Hemocentro, Ribeirão Preto, SP, Brazil.
Cristiane Fração DiefenbachHospital De Caridade Dr. Astrogildo De Azevedo, Departamento de Hematologia e Oncologia, Rio Grande do Sul, RS, Brazil.
Dalnei Veiga PereiraHospital De Caridade Dr. Astrogildo De Azevedo, Departamento de Hematologia e Oncologia, Rio Grande do Sul, RS, Brazil.
Simone KashimaUniversidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Hemocentro, Ribeirão Preto, SP, Brazil.
Svetoslav Nanev SlavovUniversidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Hemocentro, Ribeirão Preto, SP, Brazil; Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Departamento de Medicina Interna, Ribeirão Preto, SP, Brazil. Electronic address: svetoslav.slavov@hemocentro.fmrp.usp.br.
Universidade de Ribeirão Preto · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Toxoplasmosis is a zoonotic infection caused by the protozoan parasite Toxoplasma gondii. The infection is widely disseminated in the human population and is usually benign or asymptomatic. Systemic T. gondii infection presents risks for pregnant women and AIDS patients. Although rare, T. gondii can cause outbreaks in urban centers. The origin of these outbreaks is not completely understood but probably results from introduction of zoonotic T. gondii strains in the population. During such outbreaks other pathogens which mimic T. gondii acute febrile syndrome may also circulate; therefore, detailed investigation of the outbreak is of extreme importance. In this study we performed viral metagenomics next-generation sequencing (mNGS) in patient samples obtained during T. gondii outbreak in Santa Maria city, South Brazil. Specific bioinformatics pipelines specialized in virus discovery were applied in order to identify co-circulating vial agents. Epstein Barr virus and Parvovirus B19 contigs were assembled and these viruses can cause symptoms similar to toxoplasmosis. In conclusion, our findings show the importance of Metagenomics next generation sequencing (mNGS) use to help characterize the outbreak more completely and in the management of the affected patients.

Indexed as

MetagenomicsToxoplasmaAntibodies, ProtozoanBrazilDisease OutbreaksHumansToxoplasmosisAntibodies, ProtozoanEpstein–Barr virusHuman Parvovirus B19Toxoplasma gondiiViral metagenomics

Identifiers

PMID32422120
PMCPMC9392116
OpenAlexW3024222602

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.