Evidence map›Paper›PMID 32421712›Full record

ArticlePLoS computational biology2020

Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation.

Abhishek Varghese, Christopher Drovandi, Antonietta Mira, Kerrie Mengersen

Abstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Abhishek VargheseSchool of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.ORCID 0000-0002-5190-5606
Christopher DrovandiSchool of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.ORCID 0000-0001-9222-8763
Antonietta MiraInstitute of Computational Science, Università della Svizzera italiana, Lugano, Switzerland.
Kerrie MengersenSchool of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.ORCID 0000-0001-8625-9168

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of interactions in complex natural systems, and the appropriate identification of parameters. A stochastic network-based Susceptible-Infected-Susceptible model has been created which simulates the spread of BBTV across the subsections of a banana plantation, parameterising nodal recovery, neighbouring and distant infectivity across summer and winter. Findings from posterior results achieved through Markov Chain Monte Carlo approach to approximate Bayesian computation suggest seasonality in all parameters, which are influenced by correlated changes in inspection accuracy, temperatures and aphid activity. This paper demonstrates how the model may be used for monitoring and forecasting of various disease management strategies to support policy-level decision making.

Indexed as

Bayes TheoremStochastic ProcessesBabuvirusDNA, ViralModels, BiologicalMusaDNA, Viral

Identifiers

PMID32421712
PMCPMC7259802

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.