Evidence map›Paper›PMID 32420905›Full record

ArticleAging2020

Identification of potential novel differentially-expressed genes and their role in invasion and migration in renal cell carcinoma.

Shen-Nan Shi, Xia Qin, Shuo Wang, Wen-Fu Wang, Yao-Feng Zhu, Yu Lin, Zun-Lin Zhou, Ben-Kang Shi, Xi-Gao Liu

Open access · greenAbstract read
In one paragraph

Article in Aging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Overexpression of PKMYT1 Facilitates Tumor Development and Is Correlated with Poor Prognosis in Clear Cell Renal Cell Carcinoma.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Shen-Nan ShiDepartment of General Surgery, Qilu Hospital of Shandong University, Jinan, Shandong, China.
Xia QinThe Graduate School of Second Military Medical University, Shanghai, China.
Shuo WangDepartment of Urology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
Wen-Fu WangDepartment of Urology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
Yao-Feng ZhuDepartment of Urology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
Yu LinThe Graduate School of Fujian Medical University, Fuzhou, Fujian, China.
Zun-Lin ZhouDepartment of Urology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
Ben-Kang ShiDepartment of Urology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
Xi-Gao LiuDepartment of Urology, Qilu Hospital of Shandong University, Jinan, Shandong, China.
Qilu Hospital of Shandong University · CNFujian Medical University · CNSecond Military Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clear cell renal cell carcinoma (ccRCC) remains one of the most common cancer types globally, and while it has been extensively studied, the molecular basis for its pathology remains incompletely understood. Herein, we profiled three previously published datasets (GSE66272, GSE100666, and GSE105261) in a single integrated analysis aimed at identifying disease-associated patterns of gene expression that may offer mechanistic insight into the drivers of this disease. We pooled expression data from 39 normal kidney samples and 39 kidney tumors, leading us to identify 310 differentially expressed genes (DEGs) that were linked to kidney cancer in all three analyzed datasets. Of these genes, 133 and 177 were up- and down-regulated, respectively, in cancer samples. We then incorporated these DEGs into a protein-protein interaction network with the STRING and Cytoscape tools, and we were able to identify signaling pathways significantly enriched for these DEGs. The relationship between DEG expression and ccRCC patient survival was further evaluated using a Kaplan-Meier approach, leading us to identify

Indexed as

Carcinoma, Renal CellKidney NeoplasmsCell Line, TumorGene Expression ProfilingGene Expression Regulation, NeoplasticHEK293 CellsHumansKidneyTranscriptomebiomarkerinvasionmigrationrenal cell carcinomaTIMP1

Identifiers

PMID32420905
PMCPMC7288970
OpenAlexW3027723027

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.