Evidence map›Paper›PMID 32420338›Full record

ArticleBioMed research international2020

Machine Learning Supports Long Noncoding RNAs as Expression Markers for Endometrial Carcinoma.

Ana Carolina Mello, Martiela Freitas, Laura Coutinho, Tiago Falcon, Ursula Matte

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ana Carolina MelloBioinformatics Core, Experimental Research Center, Hospital de Clínicas de Porto Alegre, Porto Alegre 90035-903, Brazil.
Martiela FreitasBioinformatics Core, Experimental Research Center, Hospital de Clínicas de Porto Alegre, Porto Alegre 90035-903, Brazil.
Laura CoutinhoBioinformatics Core, Experimental Research Center, Hospital de Clínicas de Porto Alegre, Porto Alegre 90035-903, Brazil.
Tiago FalconBioinformatics Core, Experimental Research Center, Hospital de Clínicas de Porto Alegre, Porto Alegre 90035-903, Brazil.
Ursula MatteBioinformatics Core, Experimental Research Center, Hospital de Clínicas de Porto Alegre, Porto Alegre 90035-903, Brazil.ORCID https://orcid.org/0000-0003-4977-6662
Universidade Federal do Rio Grande do Sul · BRHospital de Clínicas de Porto Alegre · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uterine corpus endometrial carcinoma (UCEC) is the second most common type of gynecological tumor. Several research studies have recently shown the potential of different ncRNAs as biomarkers for prognostics and diagnosis in different types of cancers, including UCEC. Thus, we hypothesized that long noncoding RNAs (lncRNAs) could serve as efficient factors to discriminate solid primary (TP) and normal adjacent (NT) tissues in UCEC with high accuracy. We performed an in silico differential expression analysis comparing TP and NT from a set of samples downloaded from the Cancer Genome Atlas (TCGA) database, targeting highly differentially expressed lncRNAs that could potentially serve as gene expression markers. All analyses were performed in R software. The receiver operator characteristics (ROC) analyses and both supervised and unsupervised machine learning indicated a set of 14 lncRNAs that may serve as biomarkers for UCEC. Functions and putative pathways were assessed through a coexpression network and target enrichment analysis.

Indexed as

Endometrial NeoplasmsMachine LearningRNA, Long NoncodingBiomarkers, TumorDatabases, GeneticFemaleGene Expression ProfilingGene Regulatory NetworksHumansROC CurveTranscriptomeBiomarkers, TumorRNA, Long Noncoding

Identifiers

PMID32420338
PMCPMC7199595
OpenAlexW2998952471

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.