Evidence map›Paper›PMID 32419153›Full record

ArticlePlant, cell & environment2020

Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings.

Nafiseh Geshnizjani, Basten L Snoek, Leo A J Willems, Juriaan A Rienstra, Harm Nijveen, Henk W M Hilhorst, Wilco Ligterink

Open access · hybridAbstract read
In one paragraph

Article in Plant, cell & environment, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  5. Plasticity of maternal environment-dependent expression-QTLs of tomato seeds.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nafiseh GeshnizjaniWageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University, Wageningen, The Netherlands.
Basten L SnoekTheoretical Biology and Bioinformatics, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0001-5321-2996
Leo A J WillemsWageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University, Wageningen, The Netherlands.
Juriaan A RienstraWageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University, Wageningen, The Netherlands.
Harm NijveenBioinformatics Group, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0002-9167-4945
Henk W M HilhorstWageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0002-6743-583X
Wilco LigterinkWageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University, Wageningen, The Netherlands.ORCID 0000-0002-0228-169X
Graduate School Experimental Plant Sciences · NLUtrecht University · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Seed quality and seedling establishment are the most important factors affecting successful crop development. They depend on the genetic background and are acquired during seed maturation and therefor, affected by the maternal environment under which the seeds develop. There is little knowledge about the genetic and environmental factors that affect seed quality and seedling establishment. The aim of this study is to identify the loci and possible molecular mechanisms involved in acquisition of seed quality and how these are controlled by adverse maternal conditions. For this, we used a tomato recombinant inbred line (RIL) population consisting of 100 lines which were grown under two different nutritional environmental conditions, high phosphate and low nitrate. Most of the seed germination traits such as maximum germination percentage (G

Indexed as

Quantitative Trait LociGene-Environment InteractionGenotypeGerminationNitratesPhosphatesSeedlingsSeedsSolanum lycopersicumNitratesPhosphateshigh phosphatelow nitrogenmaternal environmentQTL × Eseedling establishmentseed qualitytomato

Identifiers

PMID32419153
PMCPMC7496158
OpenAlexW3028278761

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.