Evidence map›Paper›PMID 32418335›Full record

ReviewMedical physics2020

Genomics models in radiotherapy: From mechanistic to machine learning.

John Kang, James T Coates, Robert L Strawderman, Barry S Rosenstein, Sarah L Kerns

Abstract readReview
In one paragraph

Review in Medical physics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

John KangDepartment of Radiation Oncology, University of Rochester Medical Center, Rochester, NY, 14642, USA.
James T CoatesCRUK/MRC Oxford Institute for Radiation Oncology, University of Oxford, Oxford, OX3 7DQ, UK.
Robert L StrawdermanDepartment of Biostatistics and Computational Biology, University of Rochester, Rochester, NY, 14642, USA.
Barry S RosensteinDepartment of Radiation Oncology and the Department of Genetics and Genomic Sciences, Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Sarah L KernsDepartment of Radiation Oncology, University of Rochester Medical Center, Rochester, NY, 14642, USA.

Funding

Individual and Community and Organizational Factors for Suicide Risk in the USAFR01MH075017 · NIMH · UNIVERSITY OF ROCHESTER · PI STRAWDERMAN, ROBERT · 2006 to 2017
$5.1M
Genome-Wide Study to Identify SNPs and CNPs Associated with Radiation InjuryR01CA134444 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI OSTRER, HARRY, ROSENSTEIN, BARRY S · 2009 to 2012
$2.3M
Risk Prediction for Development of Adverse Effects FOllowing Radiotherapy for Prostate CancerK07CA187546 · NCI · UNIVERSITY OF ROCHESTER · PI KERNS, SARAH L. · 2015 to 2019
$649k
NCI NIH HHS HHSN261201500043CNCI NIH HHS K07 CA187546NCI NIH HHS R01 CA134444NIMH NIH HHS R01 MH075017
6 · The paper itself

Abstract

Machine learning (ML) provides a broad framework for addressing high-dimensional prediction problems in classification and regression. While ML is often applied for imaging problems in medical physics, there are many efforts to apply these principles to biological data toward questions of radiation biology. Here, we provide a review of radiogenomics modeling frameworks and efforts toward genomically guided radiotherapy. We first discuss medical oncology efforts to develop precision biomarkers. We next discuss similar efforts to create clinical assays for normal tissue or tumor radiosensitivity. We then discuss modeling frameworks for radiosensitivity and the evolution of ML to create predictive models for radiogenomics.

Indexed as

GenomicsMachine LearningHumansRadiotherapy, Computer-Assistedblack box modelmodelingradiogenomicsradiosensitivity

Identifiers

PMID32418335
PMCPMC8725063

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.