Evidence map›Paper›PMID 32418034›Full record

ArticleCurrent topics in microbiology and immunology2023

Lassa Virus Genetics.

Raphaëlle Klitting, Samar B Mehta, Judith U Oguzie, Paul E Oluniyi, Matthias G Pauthner, Katherine J Siddle, Kristian G Andersen, Christian T Happi, Pardis C Sabeti

Abstract read
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In one paragraph

Article in Current topics in microbiology and immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Robust polyfunctional CD8The Journal of general virology · 2025
    Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Raphaëlle KlittingDepartment of Immunology and Microbiology, The Scripps Research Institute , La Jolla, CA, USA.
Samar B MehtaBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Judith U OguzieAfrican Center of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
Paul E OluniyiAfrican Center of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
Matthias G PauthnerDepartment of Immunology and Microbiology, The Scripps Research Institute , La Jolla, CA, USA.
Katherine J SiddleBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Kristian G AndersenDepartment of Immunology and Microbiology, The Scripps Research Institute , La Jolla, CA, USA. kga1978@gmail.com.
Christian T HappiAfrican Center of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University, Ede, Osun State, Nigeria.
Pardis C SabetiBroad Institute of MIT and Harvard, Cambridge, MA, USA. pardis@broadinstitute.org.
Broad Institute · USRedeemer's University · NGScripps Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In a pattern repeated across a range of ecological niches, arenaviruses have evolved a compact four-gene genome to orchestrate a complex life cycle in a narrow range of susceptible hosts. A number of mammalian arenaviruses cross-infect humans, often causing a life-threatening viral hemorrhagic fever. Among this group of geographically bound zoonoses, Lassa virus has evolved a unique niche that leads to significant and sustained human morbidity and mortality. As a biosafety level 4 pathogen, direct study of the pathogenesis of Lassa virus is limited by the sparse availability, high operating costs, and technical restrictions of the high-level biocontainment laboratories required for safe experimentation. In this chapter, we introduce the relationship between genome structure and the life cycle of Lassa virus and outline reverse genetic approaches used to probe and describe functional elements of the Lassa virus genome. We then review the tools used to obtain viral genomic sequences used for phylogeny and molecular diagnostics, before shifting to a population perspective to assess the contributions of phylogenetic analysis in understanding the evolution and ecology of Lassa virus in West Africa. We finally consider the future outlook and clinical applications for genetic study of Lassa virus.

Indexed as

Lassa FeverLassa virusAfrica, WesternAnimalsHumansMammalsPhylogenyZoonoses

Identifiers

PMID32418034
OpenAlexW3025779025

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.