Evidence map›Paper›PMID 32417295›Full record

ArticleTicks and tick-borne diseases2020

GTP cyclohydrolase I activity from Rickettsia monacensis strain Humboldt, a rickettsial endosymbiont of Ixodes pacificus.

James Bodnar, Sergio Fitch, Jessica Sanchez, Molly Lesser, David S Baston, Jianmin Zhong

Abstract read
In one paragraph

Article in Ticks and tick-borne diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Discovery and Surveillance of Tick-Borne Pathogens.Journal of medical entomology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

James BodnarDepartment of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA. Electronic address: jlb264@humboldt.edu.
Sergio FitchDepartment of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA. Electronic address: sf935@humboldt.edu.
Jessica SanchezDepartment of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA. Electronic address: jls231@humboldt.edu.
Molly LesserDepartment of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA. Electronic address: ml366@humboldt.edu.
David S BastonDepartment of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA. Electronic address: dsb328@humboldt.edu.
Jianmin ZhongDepartment of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA. Electronic address: jz15@humboldt.edu.

Funding

Symbiotic Rickettsia Species as a Model System for the Study of Folate BiosynthesR15AI099902 · NIAID · HUMBOLDT STATE UNIVERSITY · PI ZHONG, JIANMIN · 2012 to 2012
$354k
NIAID NIH HHS R15 AI099902
6 · The paper itself

Abstract

The complete folate biosynthesis pathway exists in the genome of a rickettsial endosymbiont of Ixodes pacificus, Rickettsia monacensis strain Humboldt (formerly known as Rickettsia species phylotype G021). Recently, our lab demonstrated that the folA gene of strain Humboldt, the final gene in the folate biosynthesis pathway, encodes a functional dihydrofolate reductase enzyme. In this study, we report R. monacensis strain Humboldt has a functional GTP cyclohydrolase I (GCH1), an enzyme required for the hydrolysis of GTP to form 7,8-dihydroneopterin triphosphate in the folate biosynthesis pathway. The GCH1 gene of R. monacensis, folE, share homology with the folE gene of R. monacensis strain IrR/Munich, with a nucleotide sequence identity of 99%. Amino acid alignment and comparative protein structure modeling have shown that the FolE protein of R. monacensis has a conserved core subunit of GCH1 from the T-fold structural superfamily. All amino acid residues, including conserved GTP binding sites and zinc binding sites, are preserved in the FolE protein of R. monacensis. A recombinant GST-FolE protein from R. monacensis was overexpressed in Escherichia coli, purified by affinity chromatography, and assayed for enzyme activity in vitro. The in vitro enzymatic assay described in this study accorded the recombinant GCH1 enzyme of R. monacensis with a specific activity of 0.81 U/mg. Our data suggest folate genes of R. monacensis strain Humboldt have the potential to produce biochemically active enzymes for de novo folate synthesis, addressing the physioecological underpinnings behind tick-Rickettsia symbioses.

Indexed as

Amino Acid SequenceAnimalsBacterial ProteinsGTP CyclohydrolaseIxodesRickettsiaSequence AlignmentSymbiosisBacterial ProteinsGTP CyclohydrolaseGTP cyclohydrolase IIxodes pacificus folE geneRickettsia monacensisstrain Humboldt

Identifiers

PMID32417295
PMCPMC7307577

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.