Evidence map›Paper›PMID 32416917›Full record

ArticleMethods in enzymology2020

Chemical tools for selective activity profiling of bacterial penicillin-binding proteins.

Shabnam Sharifzadeh, Nathaniel W Brown, Joshua D Shirley, Kevin E Bruce, Malcolm E Winkler, Erin E Carlson

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Antibiotic-Induced Bacterial Cell Death: A "Radical" Way of Dying?Current topics in microbiology and immunology · 2025
    Article
  2. Review
  3. Comprehensive Approaches to CombattingAntibiotics (Basel, Switzerland) · 2024
    Review
  4. Structural Insights into the Penicillin-Binding Protein 4 (DacB) fromInternational journal of molecular sciences · 2024
    Article
  5. Review
  6. β-Lactams from the Ocean.Marine drugs · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. The Pneumococcal Divisome: Dynamic Control ofFrontiers in microbiology · 2021
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shabnam SharifzadehDepartment of Chemistry, University of Minnesota, Minneapolis, MN, United States.
Nathaniel W BrownDepartment of Chemistry, University of Minnesota, Minneapolis, MN, United States.
Joshua D ShirleyDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, United States.
Kevin E BruceDepartment of Biology, Indiana University, Bloomington, IN, United States.
Malcolm E WinklerDepartment of Biology, Indiana University, Bloomington, IN, United States.
Erin E CarlsonDepartment of Chemistry, University of Minnesota, Minneapolis, MN, United States; Department of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, United States; Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, United States. Electronic address: carlsone@umn.edu.
University of Minnesota · USIndiana University Bloomington · US

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR002494 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R, WEISDORF, DANIEL J · 2018 to 2022
$34.9M
Training Research Educators in Minnesota (TREM) whilst increasing diversityK12GM119955 · NIGMS · UNIVERSITY OF MINNESOTA · PI David Irwin Greenstein, Julia Willett · 2017 to 2026
$6.5M
New Regulatory Interactions and Circuits that Mediate the Dynamics, Homeostasis, and Stress Responses of Peptidoglycan Synthesis in the Superbug Streptococcus pneumoniaeR35GM131767 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI MALCOLM E. WINKLER · 2019 to 2026
$4.8M
NRSA Training CoreTL1TR002493 · NCATS · UNIVERSITY OF MINNESOTA · PI FULKERSON, JAYNE ALLYN · 2018 to 2022
$3.1M
Spaciotemporal Regulation of Specific Penicillin Binding Protein (PBP) Function Determined by New Activity-Based ApproachesR01GM128439 · NIGMS · UNIVERSITY OF MINNESOTA · PI CARLSON, ERIN ELIZABETH, WINKLER, MALCOLM E. · 2018 to 2019
$936k
Acquisition of a DeltaVision OMX-SR Imaging SystemS10OD024988 · OD · INDIANA UNIVERSITY INDIANAPOLIS · PI WALCZAK, CLAIRE E · 2018 to 2018
$600k
NCATS NIH HHS TL1 TR002493NCATS NIH HHS UL1 TR002494NIGMS NIH HHS K12 GM119955NIGMS NIH HHS R01 GM128439NIGMS NIH HHS R35 GM131767NIH HHS S10 OD024988
6 · The paper itself

Abstract

Penicillin-binding proteins (PBPs) are membrane-associated proteins involved in the biosynthesis of peptidoglycan (PG), the main component of bacterial cell walls. These proteins were discovered and named for their affinity to bind the β-lactam antibiotic penicillin. The importance of the PBPs has long been appreciated; however, specific roles of individual family members in each bacterial strain, as well as their protein-protein interactions, are yet to be understood. The apparent functional redundancy of the 4-18 PBPs that most eubacteria possess makes determination of their individual roles difficult. Existing techniques to study PBPs are not ideal because they do not directly visualize protein activity and can suffer from artifacts and perturbations of native PBP function. Therefore, development of new methods for studying the roles of individual PBPs in cell wall synthesis is required. We recently generated a library of fluorescent chemical probes containing a β-lactone scaffold that specifically targets the PBPs, enabling the visualization of their catalytic activity. Herein, we describe a general protocol to label and detect the activity of individual PBPs in Streptococcus pneumoniae using our fluorescent β-lactone probes.

Indexed as

BacteriaPenicillinsAnti-Bacterial AgentsBacterial ProteinsCell WallPenicillin-Binding ProteinsStreptococcus pneumoniaeAnti-Bacterial AgentsBacterial ProteinsPenicillin-Binding ProteinsPenicillinsActivity-based probesActivity-based protein profilingChemical microbiologyChemical probe designChemical probesElectrophilic centerPenicillin-binding proteinsSuper-resolution fluorescence microscopyβ-Lactones

Identifiers

PMID32416917
PMCPMC7549377
OpenAlexW3020933323

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.