Evidence map›Paper›PMID 32415159›Full record

ArticleScientific reports2020

Oxidosqualene cyclases involved in the biosynthesis of triterpenoids in Quercus suber cork.

Lucas Busta, Olga Serra, Ok Tae Kim, Marisa Molinas, Irene Peré-Fossoul, Mercè Figueras, Reinhard Jetter

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

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  5. Understanding metabolic diversification in plants: branchpoints in the evolution of specialized metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
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  9. Multiomics Molecular Research into the Recalcitrant and OrphanInternational journal of molecular sciences · 2022
    Review
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  11. Review
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  15. A co-opted steroid synthesis gene, maintained in sorghum but not maize, is associated with a divergence in leaf wax chemistry.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Lucas Busta *Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC, V6T 1Z4, Canada.
Olga Serra *Laboratori del Suro, Department of Biology, Facultat de Ciències, Universitat de Girona, Campus Montilivi sn. 17071, Girona, Spain.
Ok Tae KimDepartment of Herbal Crop Research, National Institute of Horticultural and Herbal Science, RDA, Eumseong, 369-873, South Korea.
Marisa MolinasLaboratori del Suro, Department of Biology, Facultat de Ciències, Universitat de Girona, Campus Montilivi sn. 17071, Girona, Spain.
Irene Peré-FossoulLaboratori del Suro, Department of Biology, Facultat de Ciències, Universitat de Girona, Campus Montilivi sn. 17071, Girona, Spain.
Mercè FiguerasLaboratori del Suro, Department of Biology, Facultat de Ciències, Universitat de Girona, Campus Montilivi sn. 17071, Girona, Spain.
Reinhard JetterDepartment of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC, V6T 1Z4, Canada. jetter@botany.ubc.ca.
Universitat de Girona · ESUniversity of British Columbia · CARural Development Administration · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cork is a water-impermeable, suberin-based material harboring lignin, (hemi)cellulose, and extractable small molecules (primarily triterpenoids). Extractables strongly influence the properties of suberin-based materials. Though these previous findings suggest a key role for triterpenoids in cork material quality, directly testing this idea is hindered in part because it is not known which genes control cork triterpenoid biosynthesis. Here, we used gas chromatography and mass spectrometry to determine that the majority (>85%) of non-polar extractables from cork were pentacyclic triterpenoids, primarily betulinic acid, friedelin, and hydroxy-friedelin. In other plants, triterpenoids are generated by oxidosqualene cyclases (OSCs). Accordingly, we mined Quercus suber EST libraries for OSC fragments to use in a RACE PCR-based approach and cloned three full-length OSC transcripts from cork (QsOSC1-3). Heterologous expression in Saccharomyces cerevisiae revealed that QsOSC1-3 respectively encoded enzymes with lupeol synthase, mixed α- and β-amyrin synthase, and mixed β-amyrin and friedelin synthase activities. These activities together account for the backbone structures of the major cork triterpenoids. Finally, we analyzed the sequences of QsOSC1-3 and other plant OSCs to identify residues associated with specific OSC activities, then combined this with analyses of Q. suber transcriptomic and genomic data to evaluate potential redundancies in cork triterpenoid biosynthesis.

Indexed as

Biosynthetic PathwaysComputational BiologyEnzyme ActivationGene Expression Regulation, EnzymologicGene Expression Regulation, PlantIntramolecular TransferasesMolecular StructureQuercusStructure-Activity RelationshipTriterpenesIntramolecular Transferaseslanosterol synthaseTriterpenes

Identifiers

PMID32415159
PMCPMC7229149
OpenAlexW3024487604

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.